Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028185

Physical Location & Seq

Genomic Coordinates Reverse (-)

4636871 .. 4637952

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTTATATCATTTCAAGTTTCTCGAAAATATAGTCTCTCAGTTGGTGTTACTTTCTGTCACATTGCTGCTGTAATGACATCTCTTCTCTTCCAGGGTACGAATGACTTGCCTGTAGAGCCAACTCAACCGCAGAGAGGTGCATCTTTAACTCGGTTTCGCGAGAAGAGAAAAGAACGTTGTTTTGATATGAAAATCTGTTACACTCAGGTCCGGGTTTCTGCAGTTATCATAGACCTGAAAGATGATAGCATTAATGGAGAGCGTAAAAAGGCCAATCTACATCATCCAAGGTTAGTTCTAATGATGAATGTGGTATCGAGGTTCGGTTCATTTGGAAAAGAGGTCAGTCATCAAGTGATTGAATTTGAGTCCCCTGCTTCGTCTGGTGCTACACAGGGATCTATTGACGGTGAAGCTAAAGGTTCAGATGTTATAGCCATGGTTGCCAACATTGCCTCTTCCGCTGTTAATGGTGATAATTCAGGCATGACCGTAGGCAGGAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT GATA tify

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

9.3

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jas_motif	PF09425	46 - 68	8.4e-08	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028185)

Species	Orthologous Gene IDs
malus_domestica	MD10G1057200.v1.1
pyrus_communis	pycom10g04410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	162
AciI	CCGC	2 cut(s)	131, 465
AclI	AACGTT	1 cut(s)	178
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	137, 501
AgsI	TTSAA	2 cut(s)	17, 365
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	365
ArsI	GACNNNNNNTTYG	2 cut(s)	19, 51
AseI	ATTAAT	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	425, 488
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	95
BcnI	CCSGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	41
BfmI	CTRYAG	2 cut(s)	114, 222
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	95, 215
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	95, 215
BmsI	GCATC	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	94, 290, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 501
Bse3DI	GCAATG	2 cut(s)	63, 453
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	3 cut(s)	94, 290, 441
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	137, 501
BseMI	GCAATG	2 cut(s)	63, 453
BseMII	CTCAG	2 cut(s)	54, 221
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	137, 501
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	401
Bsp19I	CCATGG	1 cut(s)	441
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	2 cut(s)	131, 465
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	2 cut(s)	53, 220
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	63, 453
BssECI	CCNNGG	3 cut(s)	94, 290, 441
BssMI	GATC	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	290, 441
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	413, 496
Bst6I	CTCTTC	4 cut(s)	90, 95, 161, 466
BstDEI	CTNAG	2 cut(s)	40, 207
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	286
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 446, 455, 464
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	93, 213
BstSFI	CTRYAG	2 cut(s)	114, 222
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	441
BtsCI	GGATG	1 cut(s)	286
BtuMI	TCGCGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	2 cut(s)	442, 490
CviJI	RGCY	4 cut(s)	121, 275, 419, 440
CviKI_1	RGCY	4 cut(s)	121, 275, 419, 440
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	40, 207
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
Eam1104I	CTCTTC	4 cut(s)	90, 95, 161, 466
EarI	CTCTTC	4 cut(s)	90, 95, 161, 466
Eco130I	CCWWGG	2 cut(s)	290, 441
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	290, 441
ErhI	CCWWGG	2 cut(s)	290, 441
FaeI	CATG	2 cut(s)	445, 493
FaiI	YATR	7 cut(s)	8, 33, 191, 233, 437, 443, 491
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	441, 489
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	214
Hin1II	CATG	2 cut(s)	445, 493
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	214
HphI	GGTGA	2 cut(s)	425, 488
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	2 cut(s)	24, 161
HpyCH4III	ACNGT	2 cut(s)	413, 496
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	143, 224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 446, 455, 464
HpyF3I	CTNAG	2 cut(s)	40, 207
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	445, 493
Kzo9I	GATC	1 cut(s)	401
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	3 cut(s)	49, 59, 200
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	4 cut(s)	77, 82, 178, 453
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	2 cut(s)	365, 481
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	4 cut(s)	131, 315, 337, 469
MseI	TTAA	3 cut(s)	149, 255, 471
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	1 cut(s)	214
MspR9I	CCNGG	2 cut(s)	95, 215
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	4 cut(s)	118, 446, 455, 464
NciI	CCSGG	1 cut(s)	215
NcoI	CCATGG	1 cut(s)	441
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	445, 493
NmuCI	GTSAC	1 cut(s)	59
NruI	TCGCGA	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	211
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	401
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	149, 255, 471
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	95, 215
SetI	ASST	9 cut(s)	142, 181, 213, 240, 296, 326, 348, 421, 427
SfaNI	GCATC	1 cut(s)	152
SfcI	CTRYAG	2 cut(s)	114, 222
SinI	GGWCC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	365, 481
SsiI	CCGC	2 cut(s)	131, 465
StyD4I	CCNGG	2 cut(s)	93, 213
StyI	CCWWGG	2 cut(s)	290, 441
TaaI	ACNGT	2 cut(s)	413, 496
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	25, 320
TasI	AATT	2 cut(s)	365, 481
Tru1I	TTAA	3 cut(s)	149, 255, 471
Tru9I	TTAA	3 cut(s)	149, 255, 471
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	206, 321, 323
VpaK11BI	GGWCC	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.