pycom10g05410

Protein translation factor SUI1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0028229
Physical Location & Seq
Reverse (-)
5762467 .. 5762868
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGATTGACCCAGATGTTCAGATCGCAACTACTTTTGACCCTCTAGCTGACACCGGAGATATATACGGCACGCCCCTATCTCCTTTCGACCCTTTTAAAGACCCTTTTAGAGACACCGAAGAGCCAGATGCGCTCGGAGCCAAGGAGTATGTGCATATTCGAGTGCAGCAGAGTAATGGAAAGAAGTGCCTGACAATAGTTGAAGGACTGAAGGAGGACCTGGACTTCAAGAAGAAGCTTAAGGATCTGAAAAGGGAGCTCTTCTGCAATTGCAATGTGGTTGAGGACAAAAAGCTCGGCAAGATAATTCAGCTCCAAGGCGATCAGCGCAACAAGGTGCTTCAGTTTCTTGTTATTGCTAATATTGCCGACAAGGAGCGGATCAAGATTCATGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
SUI1

Protein Analysis

134

Amino Acids

15.15

Weight (kDa)

5.71

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUI1 PF01253 48 - 118 1.5e-20 Translation initiation factor SUI1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0028229)

Species Orthologous Gene IDs
malus_domestica MD10G1068300.v1.1
pyrus_communis pycom10g05410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 379
AciI CCGC 1 cut(s) 379
AclWI GGATC 2 cut(s) 252, 389
AcuI CTGAAG 2 cut(s) 230, 326
AflII CTTAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 203, 229
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 5 cut(s) 47, 238, 259, 295, 313
AluI AGCT 5 cut(s) 47, 238, 259, 295, 313
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 2 cut(s) 252, 389
ApeKI GCWGC 1 cut(s) 166
AspLEI GCGC 2 cut(s) 133, 330
AspS9I GGNCC 1 cut(s) 217
AvaII GGWCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 44
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 141, 316
BsaWI WCCGGW 1 cut(s) 53
Bse3DI GCAATG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 141, 316
BseMI GCAATG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 4 cut(s) 21, 244, 322, 381
BspACI CCGC 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 2 cut(s) 252, 389
BspQI GCTCTTC 2 cut(s) 114, 266
BspTI CTTAAG 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 141, 316
BssMI GATC 4 cut(s) 21, 244, 322, 381
BssT1I CCWWGG 2 cut(s) 141, 316
Bst2UI CCWGG 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 114, 266
BstAFI CTTAAG 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 71
BstHHI GCGC 2 cut(s) 133, 330
BstKTI GATC 4 cut(s) 24, 247, 325, 384
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 21, 244, 322, 381
BstMWI GCNNNNNNNGC 4 cut(s) 130, 137, 327, 365
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 2 cut(s) 133, 330
Cfr13I GGNCC 1 cut(s) 217
CviAII CATG 1 cut(s) 392
CviJI RGCY 7 cut(s) 47, 124, 140, 238, 259, 295, 313
CviKI_1 RGCY 7 cut(s) 47, 124, 140, 238, 259, 295, 313
DpnI GATC 4 cut(s) 23, 246, 324, 383
DpnII GATC 4 cut(s) 21, 244, 322, 381
DraI TTTAAA 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 114, 266
EarI CTCTTC 2 cut(s) 114, 266
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 141, 316
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 2 cut(s) 230, 326
EcoICRI GAGCTC 1 cut(s) 259
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 2 cut(s) 141, 316
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 141, 316
FaeI CATG 1 cut(s) 395
FaiI YATR 5 cut(s) 62, 64, 150, 156, 393
FatI CATG 1 cut(s) 391
Fnu4HI GCNGC 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 167
FspBI CTAG 1 cut(s) 44
GlaI GCGC 2 cut(s) 132, 329
GluI GCNGC 1 cut(s) 167
HapII CCGG 1 cut(s) 54
HhaI GCGC 2 cut(s) 133, 330
Hin1II CATG 1 cut(s) 395
Hin6I GCGC 2 cut(s) 131, 328
HinP1I GCGC 2 cut(s) 131, 328
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 54
Hpy188I TCNGA 3 cut(s) 21, 137, 249
Hpy188III TCNNGA 2 cut(s) 229, 385
HpyAV CCTTC 2 cut(s) 197, 205
HpyCH4V TGCA 4 cut(s) 154, 166, 267, 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 137, 327, 365
Hsp92II CATG 1 cut(s) 395
HspAI GCGC 2 cut(s) 131, 328
Kzo9I GATC 4 cut(s) 21, 244, 322, 381
LguI GCTCTTC 2 cut(s) 114, 266
LmnI GCTCC 4 cut(s) 137, 256, 318, 376
LpnPI CCDG 6 cut(s) 24, 67, 138, 203, 206, 233
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 44
MalI GATC 4 cut(s) 23, 246, 324, 383
MbiI CCGCTC 1 cut(s) 379
MboI GATC 4 cut(s) 21, 244, 322, 381
MboII GAAGA 3 cut(s) 131, 244, 253
MfeI CAATTG 1 cut(s) 268
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 2 cut(s) 268, 306
MnlI CCTC 3 cut(s) 51, 208, 277
MseI TTAA 2 cut(s) 96, 240
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 221
MunI CAATTG 1 cut(s) 268
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 4 cut(s) 130, 137, 327, 365
NdeII GATC 4 cut(s) 21, 244, 322, 381
NlaIII CATG 1 cut(s) 395
NlaIV GGNNCC 1 cut(s) 139
NmeAIII GCCGAG 1 cut(s) 276
PciSI GCTCTTC 2 cut(s) 114, 266
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 139
PspPI GGNCC 1 cut(s) 217
PspPPI RGGWCCY 1 cut(s) 217
PsuI RGATCY 1 cut(s) 244
SacI GAGCTC 1 cut(s) 261
SapI GCTCTTC 2 cut(s) 114, 266
SaqAI TTAA 2 cut(s) 96, 240
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 4 cut(s) 21, 244, 322, 381
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 1 cut(s) 261
SetI ASST 7 cut(s) 49, 222, 240, 261, 297, 315, 339
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 268, 306
SsiI CCGC 1 cut(s) 379
SspI AATATT 1 cut(s) 364
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 219
StyI CCWWGG 2 cut(s) 141, 316
TaqI TCGA 2 cut(s) 87, 160
TasI AATT 2 cut(s) 268, 306
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 2 cut(s) 96, 240
Tru9I TTAA 2 cut(s) 96, 240
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 380
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 217
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.