Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029377

Physical Location & Seq

Genomic Coordinates Reverse (-)

10671795 .. 10673966

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTATGAACCTGACATTCGAATCAATGAGGAGCTGATGGATACTTTGACTCTTGAGGAGAAGAAGGCTTGGGTTGAGAGTAGTCCCACCAAGGTCTTTGACATTGATCCTAAAACCGACAAGGTCATGGTGGTTGATCCTGAAGCATACACCTATGATGATGAATCGATCAAGAAAGCAGAAGCTATGGGGAAGTCTGGGCTTGTGGATATCACTGCAAGTGAAGATAGCTTTATATTCACAGTGGAATCTACCGGTGCTATTAAAGCTGCTCAGTTGCTCCTCAATGCTATAGAAGTCCTGAAACAGAAGCTGGACGCAGTGCGCCTTTCTGAGGATACTGTAGAAGCTGATGACCAGTTTGGTGAATTAGGTGCACATATGCGAGGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

132

Amino Acids

14.5

Weight (kDa)

4.3

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_L	PF01193	67 - 105	5.7e-08	RNA polymerase Rpb3/Rpb11 dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029377)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08210
rosa_multiflora	Rmu_co8219082.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	101, 131
AcuI	CTGAAG	1 cut(s)	162
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgeI	ACCGGT	1 cut(s)	254
AluBI	AGCT	6 cut(s)	34, 185, 231, 269, 313, 350
AluI	AGCT	6 cut(s)	34, 185, 231, 269, 313, 350
Alw21I	GWGCWC	1 cut(s)	379
Alw44I	GTGCAC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	101, 131
AlwNI	CAGNNNCTG	1 cut(s)	313
ApaLI	GTGCAC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	31
BciVI	GTATCC	2 cut(s)	34, 331
BfmI	CTRYAG	2 cut(s)	291, 342
BfuI	GTATCC	2 cut(s)	34, 331
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	358
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	287, 324
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	3 cut(s)	44, 71, 272
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	256
BshTI	ACCGGT	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	106, 136, 168
BspCNI	CTCAG	2 cut(s)	286, 325
BspDI	ATCGAT	1 cut(s)	167
BspPI	GGATC	2 cut(s)	101, 131
BspT104I	TTCGAA	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	3 cut(s)	106, 136, 168
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	244, 343
BstBI	TTCGAA	1 cut(s)	19
BstDEI	CTNAG	2 cut(s)	273, 333
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	109, 139, 171
BstMBI	GATC	3 cut(s)	106, 136, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	2 cut(s)	291, 342
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	256
Bsu15I	ATCGAT	1 cut(s)	167
BsuI	GTATCC	2 cut(s)	34, 331
BsuTUI	ATCGAT	1 cut(s)	167
BtsI	GCAGTG	2 cut(s)	213, 327
BtsIMutI	CAGTG	3 cut(s)	213, 249, 327
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	167
CseI	GACGC	1 cut(s)	326
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	34, 68, 185, 202, 231, 269, 313, 350
CviKI_1	RGCY	8 cut(s)	34, 68, 185, 202, 231, 269, 313, 350
DdeI	CTNAG	2 cut(s)	273, 333
DpnI	GATC	3 cut(s)	108, 138, 170
DpnII	GATC	3 cut(s)	106, 136, 168
Eco130I	CCWWGG	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	1 cut(s)	130
FaiI	YATR	9 cut(s)	6, 128, 148, 156, 188, 236, 293, 381, 383
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	270
Fsp4HI	GCNGC	1 cut(s)	270
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	270
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	4 cut(s)	21, 49, 164, 248
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	4 cut(s)	53, 140, 172, 301
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	244, 343
HpyCH4V	TGCA	2 cut(s)	218, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	273, 333
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	106, 136, 168
LmnI	GCTCC	2 cut(s)	31, 285
LpnPI	CCDG	7 cut(s)	24, 153, 183, 268, 299, 314, 371
Lsp1109I	GCAGC	1 cut(s)	256
MalI	GATC	3 cut(s)	108, 138, 170
MboI	GATC	3 cut(s)	106, 136, 168
MboII	GAAGA	2 cut(s)	73, 236
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	43
MnlI	CCTC	6 cut(s)	22, 49, 293, 328, 380, 383
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	3 cut(s)	106, 136, 168
NlaIII	CATG	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	19
PfeI	GAWTC	3 cut(s)	21, 164, 248
PflFI	GACNNNGTC	1 cut(s)	122
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	271
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PstNI	CAGNNNCTG	1 cut(s)	313
PsyI	GACNNNGTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	3 cut(s)	106, 136, 168
SchI	GAGTC	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	379
SfcI	CTRYAG	2 cut(s)	291, 342
SfuI	TTCGAA	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	244, 343
TaqI	TCGA	2 cut(s)	19, 167
TasI	AATT	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	21, 164, 248
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	3 cut(s)	220, 249, 327
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	21, 177
TspRI	CASTG	3 cut(s)	220, 249, 327
Tth111I	GACNNNGTC	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.