Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8219082.1

Orthogroup ID

OG0029377

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 302

Gene Structure 302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8219082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 251 bp

catacacttatgatgatgaagtgatcaagaaagcagaagctatggggaagcctgggcttgtggacatcactgccaaagaagatagttttatattcacagtggaatctactggtgcaattaaggcttctcagctgctgctcaatgccatagaaatcctgaaacagaaacttgatgctgtgcgcctttcagaggatactgttgaagctgatgatcaatttggtgagttaggtgcacatatgcgaggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005730 GO:0005737 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009888 GO:0010374 GO:0010375 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048856 GO:0055029 GO:0061695 GO:0070013 GO:0090558 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_A_bac RNA_pol_L

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

4.49

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029377)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08210
rosa_multiflora	Rmu_co8219082.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	3 cut(s)	40, 132, 205
AluI	AGCT	3 cut(s)	40, 132, 205
Alw21I	GWGCWC	1 cut(s)	234
Alw44I	GTGCAC	1 cut(s)	230
AlwNI	CAGNNNCTG	1 cut(s)	135
ApaLI	GTGCAC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	132, 135
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	119, 122
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	186
BclI	TGATCA	2 cut(s)	23, 210
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	2 cut(s)	133, 136
BlsI	GCNGC	2 cut(s)	134, 137
Bme1390I	CCNGG	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	2 cut(s)	119, 122
BsiHKAI	GWGCWC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	23, 210
BspCNI	CTCAG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	23, 210
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	2 cut(s)	99, 198
BstDEI	CTNAG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	26, 213
BstMBI	GATC	2 cut(s)	23, 210
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	119, 122
BsuI	GTATCC	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	68, 104
CaiI	CAGNNNCTG	1 cut(s)	135
CfoI	GCGC	1 cut(s)	182
CviJI	RGCY	6 cut(s)	40, 51, 57, 124, 132, 205
CviKI_1	RGCY	6 cut(s)	40, 51, 57, 124, 132, 205
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	25, 212
DpnII	GATC	2 cut(s)	23, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	51
FaiI	YATR	7 cut(s)	3, 11, 43, 91, 148, 236, 238
FauNDI	CATATG	1 cut(s)	236
FbaI	TGATCA	2 cut(s)	23, 210
Fnu4HI	GCNGC	2 cut(s)	133, 136
Fsp4HI	GCNGC	2 cut(s)	133, 136
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	133, 136
HhaI	GCGC	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	2 cut(s)	63, 232
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	27, 156
Hpy8I	GTNNAC	2 cut(s)	63, 232
HpyCH4III	ACNGT	2 cut(s)	99, 198
HpyCH4V	TGCA	2 cut(s)	115, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	180
Ksp22I	TGATCA	2 cut(s)	23, 210
Kzo9I	GATC	2 cut(s)	23, 210
LpnPI	CCDG	4 cut(s)	38, 65, 95, 169
Lsp1109I	GCAGC	2 cut(s)	119, 122
LweI	GCATC	1 cut(s)	162
MalI	GATC	2 cut(s)	25, 212
MboI	GATC	2 cut(s)	23, 210
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	2 cut(s)	116, 214
MnlI	CCTC	3 cut(s)	183, 235, 238
MseI	TTAA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	121
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	2 cut(s)	23, 210
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	134, 137
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PstNI	CAGNNNCTG	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	133, 136
Sau3AI	GATC	2 cut(s)	23, 210
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	4 cut(s)	42, 134, 207, 231
SfaNI	GCATC	1 cut(s)	162
SgeI	CNNG	7 cut(s)	39, 64, 65, 70, 122, 168, 181
Sse9I	AATT	2 cut(s)	116, 214
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	99, 198
TasI	AATT	2 cut(s)	116, 214
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	75, 104
TseI	GCWGC	2 cut(s)	132, 135
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	75, 104
VneI	GTGCAC	1 cut(s)	230
XagI	CCTNNNNNAGG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.