Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029378

Physical Location & Seq

Genomic Coordinates Forward (+)

11108708 .. 11109727

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGCAATTTTTTTCCCAAAAAAAAAAAAAAAAAAGGCACTCCAATTCCAACGTTATTATTCAGACGGCTTTTCAAACTTTTTCACTCTCACTTTCTTATTAAAACCCTACAAAAAAGACACTCCACTCAGCTCCATCGCCGCTGCCGCTGCACCATGGCCTTCTCCGAGTTCCGACCGCTGGACGAGAAGGTCCTCATAGAGTACATAAAGGCCACGCCTTCTCTCGCTTCTAAGCTCGGCAACAAGTTCGACAATTTAACCATCAAAGAAGTTGGCGATGGCAATCTCAACTTCGTCTTCATCGTCGTTGGTTCTTCTGGTTCTTTCGTCATCAAGCAGGCTCTTCCATATATCCGTTGTATTGGTGAGTCATGGCCAATGACAAAGGAAAGAGCATATTTTGAGGCATTGGCACTTAAAGAGCATGGAAGTTTGAGTCCTGATCGATGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0000302 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019509 GO:0019752 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0042802 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046522 GO:0050896 GO:0051716 GO:0070887 GO:0071241 GO:0071248 GO:0071265 GO:0071267 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0071731 GO:0071732 GO:0097366 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

APH

Protein Analysis

153

Amino Acids

17.5

Weight (kDa)

10.02

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029378)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08460
rosa_multiflora	Rmu_sc0039864.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AciI	CCGC	3 cut(s)	142, 148, 179
AclI	AACGTT	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	377
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	2 cut(s)	133, 238
AluI	AGCT	2 cut(s)	133, 238
AoxI	GGCC	3 cut(s)	159, 213, 377
ApeKI	GCWGC	2 cut(s)	144, 150
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	292
BbvI	GCAGC	2 cut(s)	131, 137
BccI	CCATC	3 cut(s)	144, 272, 275
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BisI	GCNGC	4 cut(s)	142, 145, 148, 151
BlsI	GCNGC	4 cut(s)	143, 146, 149, 152
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	292
Bsa29I	ATCGAT	1 cut(s)	448
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse8I	GATNNNNATC	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	131, 137
BsgI	GTGCAG	1 cut(s)	136
Bsh1285I	CGRYCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	161, 215, 379
BshVI	ATCGAT	1 cut(s)	448
BsiEI	CGRYCG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	3 cut(s)	161, 215, 379
Bsp143I	GATC	1 cut(s)	445
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	3 cut(s)	142, 148, 179
BspANI	GGCC	3 cut(s)	161, 215, 379
BspCNI	CTCAG	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	448
BspQI	GCTCTTC	1 cut(s)	351
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	129, 234
BstDSI	CCRYGG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	448
BstMBI	GATC	1 cut(s)	445
BstMCI	CGRYCG	1 cut(s)	179
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 150
BstV1I	GCAGC	2 cut(s)	131, 137
BstV2I	GAAGAC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	448
BsuRI	GGCC	3 cut(s)	161, 215, 379
BsuTUI	ATCGAT	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	2 cut(s)	122, 294
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	157, 375, 428
CviJI	RGCY	7 cut(s)	70, 133, 161, 215, 238, 344, 379
CviKI_1	RGCY	7 cut(s)	70, 133, 161, 215, 238, 344, 379
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	129, 234
DpnI	GATC	1 cut(s)	447
DpnII	GATC	1 cut(s)	445
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	160, 378, 431
FaiI	YATR	8 cut(s)	158, 200, 209, 352, 354, 376, 400, 429
FatI	CATG	3 cut(s)	156, 374, 427
Fnu4HI	GCNGC	4 cut(s)	142, 145, 148, 151
Fsp4HI	GCNGC	4 cut(s)	142, 145, 148, 151
GluI	GCNGC	4 cut(s)	142, 145, 148, 151
HaeIII	GGCC	3 cut(s)	161, 215, 379
Hin1II	CATG	3 cut(s)	160, 378, 431
HinfI	GANTC	2 cut(s)	371, 439
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	3 cut(s)	65, 169, 176
Hpy188III	TCNNGA	2 cut(s)	443, 456
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	172, 184, 231
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 150
HpyF3I	CTNAG	2 cut(s)	129, 234
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	3 cut(s)	160, 378, 431
Kzo9I	GATC	1 cut(s)	445
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	3 cut(s)	167, 306, 326
Lsp1109I	GCAGC	2 cut(s)	131, 137
MaeII	ACGT	1 cut(s)	53
MalI	GATC	1 cut(s)	447
MboI	GATC	1 cut(s)	445
MboII	GAAGA	3 cut(s)	292, 309, 338
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	3 cut(s)	7, 45, 256
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	2 cut(s)	380, 448
MmeI	TCCRAC	2 cut(s)	74, 199
MnlI	CCTC	2 cut(s)	206, 400
Mox20I	TGGCCA	1 cut(s)	379
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	3 cut(s)	102, 260, 420
Msp20I	TGGCCA	1 cut(s)	379
MspA1I	CMGCKG	3 cut(s)	144, 150, 181
MwoI	GCNNNNNNNGC	2 cut(s)	147, 150
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	445
NlaIII	CATG	3 cut(s)	160, 378, 431
NmeAIII	GCCGAG	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	143, 146, 149, 152
PleI	GAGTC	2 cut(s)	379, 447
PpsI	GAGTC	2 cut(s)	379, 447
PpuMI	RGGWCCY	1 cut(s)	193
Psp1406I	AACGTT	1 cut(s)	53
Psp5II	RGGWCCY	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	102, 260, 420
SatI	GCNGC	4 cut(s)	142, 145, 148, 151
Sau3AI	GATC	1 cut(s)	445
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	380, 448
SetI	ASST	4 cut(s)	56, 135, 195, 240
SinI	GGWCC	1 cut(s)	193
Sse9I	AATT	3 cut(s)	7, 45, 256
SsiI	CCGC	3 cut(s)	142, 148, 179
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	252, 448
TasI	AATT	3 cut(s)	7, 45, 256
TatI	WGTACW	1 cut(s)	204
TauI	GCSGC	2 cut(s)	144, 150
Tru1I	TTAA	3 cut(s)	102, 260, 420
Tru9I	TTAA	3 cut(s)	102, 260, 420
TseI	GCWGC	2 cut(s)	144, 150
TspDTI	ATGAA	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.