pycom10g09220
MYB Family

Telomere repeat-binding factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0028209
Physical Location & Seq
Forward (+)
12194880 .. 12199371
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 627 bp
ATGGAAGCTATAACTAGGTTGAAGGAGCCTGGTGGATCTAATAAAACGACTATTGCTGGATATATAGAGGACGAATATTTGGCTCCTCAAGATTTCAAGAGGCTATTATCTGAAAAATTAAAATACCTGACAGCAAGCCGTAAATTGATTAAGGTAAAACGCAGATACAGGATTGCACCTACTCCAGCGTTATCTGAAAAAAGAAGAAATACCTCAATGTATCCTTTTGAGGGAAGACAGATGGCGTCTGCTTTTGAGGGAAGACAGATGGCGTCTGCTTTTGAGGGAAGACGTATGGCATCTCCCTTTGAGGGAAGACCAATGCTGTCTCCTTTTGAGGGAAGGTATATGGCGTCTCCAAAATTAGAAAATGATGAGGGTACCATCCTGATGAAAGCCCAAATTGATTTGGAGCTTGCGAAGATGAGGACTATGACCCCCAGGGAAGCTACTTTAGCTGCTGCTCAAGCAGTGAAAGAGGCAGAAGCTGCCATTGCTGAAGCCGAAGAGGCAGCCAGGGAAGCTGAGGCTGCTGAAGCTGATGCAGAAGCAGCACAAGCTTTTGCAGAAGCAGCAATGAAGCCACTAAAAGGAGGAAATGCTATGAAGACGATGAATCGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033613 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0070491 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:1990841 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone Myb_DNA-binding

Protein Analysis

209

Amino Acids

23.02

Weight (kDa)

9.19

Isoelectric Point (pI)

50.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 1 - 53 2.6e-06 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028209)

Species Orthologous Gene IDs
malus_domestica MD10G1106800.v1.1
pyrus_communis pycom10g09220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AclWI GGATC 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 519, 555
AcyI GRCGYC 3 cut(s) 245, 272, 353
AfaI GTAC 1 cut(s) 382
AfiI CCNNNNNNNGG 4 cut(s) 230, 311, 338, 590
AgsI TTSAA 2 cut(s) 22, 97
AjnI CCWGG 3 cut(s) 28, 440, 515
AluBI AGCT 8 cut(s) 8, 415, 449, 458, 488, 524, 539, 560
AluI AGCT 8 cut(s) 8, 415, 449, 458, 488, 524, 539, 560
Alw26I GTCTC 2 cut(s) 333, 360
AlwI GGATC 1 cut(s) 43
AlwNI CAGNNNCTG 1 cut(s) 488
ApeKI GCWGC 7 cut(s) 458, 461, 488, 512, 530, 551, 572
Asp718I GGTACC 1 cut(s) 380
BanI GGYRCC 1 cut(s) 380
BbsI GAAGAC 5 cut(s) 241, 268, 295, 322, 614
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 7 cut(s) 445, 448, 475, 517, 524, 563, 584
BccI CCATC 3 cut(s) 235, 262, 392
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 3 cut(s) 30, 442, 517
BciVI GTATCC 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 333, 360
BfaI CTAG 1 cut(s) 15
BfuI GTATCC 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 509
BisI GCNGC 7 cut(s) 459, 462, 489, 513, 531, 552, 573
BlsI GCNGC 7 cut(s) 460, 463, 490, 514, 532, 553, 574
Bme1390I CCNGG 3 cut(s) 30, 442, 517
BmiI GGNNCC 3 cut(s) 27, 84, 382
BmrFI CCNGG 3 cut(s) 30, 442, 517
BmsI GCATC 2 cut(s) 308, 532
BpiI GAAGAC 5 cut(s) 241, 268, 295, 322, 614
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 72, 450
BsaHI GRCGYC 3 cut(s) 245, 272, 353
BsaJI CCNNGG 3 cut(s) 440, 441, 516
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 311, 338, 590
Bse3DI GCAATG 2 cut(s) 492, 582
BseBI CCWGG 3 cut(s) 30, 442, 517
BseDI CCNNGG 3 cut(s) 440, 441, 516
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 4 cut(s) 230, 311, 338, 590
BseMI GCAATG 2 cut(s) 492, 582
BseMII CTCAG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 7 cut(s) 445, 448, 475, 517, 524, 563, 584
BshNI GGYRCC 1 cut(s) 380
BslFI GGGAC 1 cut(s) 606
BslI CCNNNNNNNGG 4 cut(s) 230, 311, 338, 590
BsmAI GTCTC 2 cut(s) 333, 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 606
Bsp143I GATC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 27, 84, 382
BspPI GGATC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 492, 582
BssECI CCNNGG 3 cut(s) 440, 441, 516
BssMI GATC 1 cut(s) 35
BssNI GRCGYC 3 cut(s) 245, 272, 353
Bst2UI CCWGG 3 cut(s) 30, 442, 517
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 3 cut(s) 245, 272, 353
BstAPI GCANNNNNTGC 1 cut(s) 488
BstC8I GCNNGC 2 cut(s) 136, 417
BstDEI CTNAG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 384
BstKTI GATC 1 cut(s) 38
BstMAI GTCTC 2 cut(s) 333, 360
BstMBI GATC 1 cut(s) 35
BstNI CCWGG 3 cut(s) 30, 442, 517
BstSCI CCNGG 3 cut(s) 28, 440, 515
BstV1I GCAGC 7 cut(s) 445, 448, 475, 517, 524, 563, 584
BstV2I GAAGAC 5 cut(s) 241, 268, 295, 322, 614
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuI GTATCC 1 cut(s) 231
BtsCI GGATG 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 1 cut(s) 477
Cac8I GCNNGC 2 cut(s) 136, 417
CaiI CAGNNNCTG 1 cut(s) 488
CseI GACGC 3 cut(s) 234, 261, 342
Csp6I GTAC 1 cut(s) 381
CviQI GTAC 1 cut(s) 381
DdeI CTNAG 1 cut(s) 525
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 519, 555
EcoRII CCWGG 3 cut(s) 28, 440, 515
Esp3I CGTCTC 1 cut(s) 360
FaiI YATR 8 cut(s) 11, 63, 65, 296, 348, 350, 434, 605
FaqI GGGAC 1 cut(s) 606
Fnu4HI GCNGC 7 cut(s) 459, 462, 489, 513, 531, 552, 573
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 7 cut(s) 459, 462, 489, 513, 531, 552, 573
FspBI CTAG 1 cut(s) 15
GluI GCNGC 7 cut(s) 459, 462, 489, 513, 531, 552, 573
GsuI CTGGAG 1 cut(s) 168
HgaI GACGC 3 cut(s) 234, 261, 342
Hin1I GRCGYC 3 cut(s) 245, 272, 353
HindIII AAGCTT 1 cut(s) 558
HinfI GANTC 1 cut(s) 616
Hpy188I TCNGA 2 cut(s) 112, 196
Hpy188III TCNNGA 3 cut(s) 89, 97, 388
HpyAV CCTTC 2 cut(s) 16, 336
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 3 cut(s) 176, 545, 566
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 3 cut(s) 245, 272, 353
KpnI GGTACC 1 cut(s) 384
Kzo9I GATC 1 cut(s) 35
LmnI GCTCC 3 cut(s) 25, 88, 412
Lsp1109I GCAGC 7 cut(s) 445, 448, 475, 517, 524, 563, 584
LweI GCATC 2 cut(s) 308, 532
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 292
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 8 cut(s) 216, 246, 273, 300, 327, 433, 518, 619
MflI RGATCY 1 cut(s) 35
MluCI AATT 4 cut(s) 116, 143, 362, 402
MseI TTAA 2 cut(s) 119, 150
MslI CAYNNNNRTG 1 cut(s) 389
MspR9I CCNGG 3 cut(s) 30, 442, 517
MvaI CCWGG 3 cut(s) 30, 442, 517
NdeII GATC 1 cut(s) 35
NlaIV GGNNCC 3 cut(s) 27, 84, 382
PasI CCCWGGG 1 cut(s) 441
PfeI GAWTC 1 cut(s) 616
PkrI GCNGC 7 cut(s) 460, 463, 490, 514, 532, 553, 574
Psp6I CCWGG 3 cut(s) 28, 440, 515
PspGI CCWGG 3 cut(s) 28, 440, 515
PspN4I GGNNCC 3 cut(s) 27, 84, 382
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 1 cut(s) 382
RsaNI GTAC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 2 cut(s) 119, 150
SatI GCNGC 7 cut(s) 459, 462, 489, 513, 531, 552, 573
Sau3AI GATC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 30, 442, 517
SfaNI GCATC 2 cut(s) 308, 532
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 2 cut(s) 87, 465
SmoI CTYRAG 2 cut(s) 87, 465
Sse9I AATT 4 cut(s) 116, 143, 362, 402
SspI AATATT 1 cut(s) 77
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 3 cut(s) 28, 440, 515
TaiI ACGT 1 cut(s) 295
TasI AATT 4 cut(s) 116, 143, 362, 402
TfiI GAWTC 1 cut(s) 616
Tru1I TTAA 2 cut(s) 119, 150
Tru9I TTAA 2 cut(s) 119, 150
TscAI CASTG 1 cut(s) 477
TseI GCWGC 7 cut(s) 458, 461, 488, 512, 530, 551, 572
TspDTI ATGAA 3 cut(s) 407, 593, 620
TspRI CASTG 1 cut(s) 477
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.