pycom10g09840

Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0029379
Physical Location & Seq
Forward (+)
13028900 .. 13029500
601 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGTTAATGAATATTACTGGTAATGTTCTTGCGACTCCAGCAGTTCATGGAACTATTCTTCCTGGAATAACTCGTAAAAGCATCATCACCATCGCCCTCGATTTTGGATACCAGGTCGAGGAACGTGTAATTCCGGTGGAGGATTTGCTTGAAGCTGACGAAGCTTTCTGCACAGGAACTGCTGTTGTTGTCACCCCAATTGGTGCTGCAACTTATCAAGGCAAAAGGGTTGAGTACAACACAGGAAAAGGAACACTCTTTCACAAACTGCGTGAAACCCTAACAGGAATCCAAACAGGGCGTCTGGAAGACAAGAAGGGATGGACCATGGAGATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
Aminotran_4

Protein Analysis

114

Amino Acids

12.32

Weight (kDa)

5.63

Isoelectric Point (pI)

18.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_4 PF01063 5 - 67 1.1e-16 Amino-transferase class IV
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029379)

Species Orthologous Gene IDs
pyrus_communis pycom10g09840
rosa_multiflora Rmu_sc0004981.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 301
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 2 cut(s) 61, 111
AloI GAACNNNNNNTCC 2 cut(s) 43, 75
AluBI AGCT 2 cut(s) 155, 164
AluI AGCT 2 cut(s) 155, 164
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 286, 318
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 2 cut(s) 79, 184
AvaII GGWCC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 98, 315
BciT130I CCWGG 2 cut(s) 63, 113
BciVI GTATCC 1 cut(s) 101
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 63, 113
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 63, 113
BmsI GCATC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 21
BsaHI GRCGYC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 22
BseBI CCWGG 2 cut(s) 63, 113
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 118
Bsp143I GATC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 22
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 1 cut(s) 333
BssNI GRCGYC 1 cut(s) 301
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 2 cut(s) 63, 113
BstACI GRCGYC 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 326
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 2 cut(s) 38, 161
BstNI CCWGG 2 cut(s) 63, 113
BstSCI CCNGG 2 cut(s) 61, 111
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 315
BsuI GTATCC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 326
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 324
CseI GACGC 1 cut(s) 290
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 47, 328
CviJI RGCY 2 cut(s) 155, 164
CviKI_1 RGCY 2 cut(s) 155, 164
CviQI GTAC 1 cut(s) 235
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 61, 111
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 2 cut(s) 50, 331
FaiI YATR 2 cut(s) 48, 329
FatI CATG 2 cut(s) 46, 327
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 21
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 301
Hin1II CATG 2 cut(s) 50, 331
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 2 cut(s) 34, 288
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 79, 184
Hpy188III TCNNGA 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 310
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 2 cut(s) 171, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 161
HpySE526I ACGT 1 cut(s) 124
Hsp92I GRCGYC 1 cut(s) 301
Hsp92II CATG 2 cut(s) 50, 331
Kzo9I GATC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 90
MabI ACCWGGT 1 cut(s) 111
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 2 cut(s) 50, 320
MfeI CAATTG 2 cut(s) 198, 337
MluCI AATT 3 cut(s) 129, 198, 337
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 3 cut(s) 107, 112, 133
MseI TTAA 1 cut(s) 5
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 63, 113
MunI CAATTG 2 cut(s) 198, 337
MvaI CCWGG 2 cut(s) 63, 113
MwoI GCNNNNNNNGC 2 cut(s) 38, 161
NcoI CCATGG 1 cut(s) 327
NdeII GATC 1 cut(s) 333
NlaIII CATG 2 cut(s) 50, 331
NmuCI GTSAC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp6I CCWGG 2 cut(s) 61, 111
PspGI CCWGG 2 cut(s) 61, 111
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 63, 113
SetI ASST 4 cut(s) 117, 127, 157, 166
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 1 cut(s) 324
Sse9I AATT 3 cut(s) 129, 198, 337
SspI AATATT 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 61, 111
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 99, 117
TasI AATT 3 cut(s) 129, 198, 337
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 23, 35
VpaK11BI GGWCC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.