Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004981.1

Orthogroup ID

OG0029379

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 876

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

gttttgaaggcactgcttagagcaaagagccgaggattttctgatgtgttatatctagactcgggcaatgttatttcaactcctacaacggctgggactatactatcaggggtaactcgaaaaagcatcattgaaatcgctcgcgatcatggttatcaggttgaggagcgtgcaattccggtagatgaactgagtgaagctgatgaagtattctgtacaggaactgcagtcggtgttgctcctgtgggaaacattacatataaagataaaaggatggaatacaaaacaggtgttcaaactgtttgtccacagctctactcaactctcataggaattcaaacgggtcgtattgaggataagaaaggctggattcttgaaattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071669

KEGG Pathways

Metabolic & Signaling

ko00270 ko00280 ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00270 map00280 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

5.45

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029379)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g09840
rosa_multiflora	Rmu_sc0004981.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	333
AfaI	GTAC	1 cut(s)	217
AgsI	TTSAA	6 cut(s)	7, 78, 134, 296, 338, 377
AluBI	AGCT	2 cut(s)	200, 313
AluI	AGCT	2 cut(s)	200, 313
AlwNI	CAGNNNCTG	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	333
ArsI	GACNNNNNNTTYG	2 cut(s)	289, 321
AvaI	CYCGRG	1 cut(s)	61
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	225
BmeT110I	CYCGRG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	179
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	145
Bsp68I	TCGCGA	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	73
BsrGI	TGTACA	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	301
BstAUI	TGTACA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	142, 171
BstDEI	CTNAG	2 cut(s)	17, 191
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	142, 171
CaiI	CAGNNNCTG	1 cut(s)	224
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	5 cut(s)	30, 92, 200, 313, 366
CviKI_1	RGCY	5 cut(s)	30, 92, 200, 313, 366
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	17, 191
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	333
FaeI	CATG	1 cut(s)	152
FaiI	YATR	6 cut(s)	52, 101, 150, 259, 261, 329
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	148
FokI	GGATG	1 cut(s)	286
FspBI	CTAG	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	96
HapII	CCGG	1 cut(s)	179
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	2 cut(s)	59, 370
HpaII	CCGG	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	56, 143, 374
Hpy8I	GTNNAC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	2 cut(s)	173, 227
HpyF3I	CTNAG	2 cut(s)	17, 191
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	166, 244
LpnPI	CCDG	8 cut(s)	78, 93, 143, 192, 204, 255, 273, 352
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MluCI	AATT	3 cut(s)	174, 333, 378
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	26, 157, 346
MseI	TTAA	1 cut(s)	385
MspI	CCGG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	144
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	152
NmeAIII	GCCGAG	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	385
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	53
SetI	ASST	4 cut(s)	162, 202, 292, 315
SfaNI	GCATC	1 cut(s)	135
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	174, 333, 378
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	174, 333, 378
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TscAI	CASTG	1 cut(s)	18
TspDTI	ATGAA	2 cut(s)	201, 219
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	333
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.