Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028012

Physical Location & Seq

Genomic Coordinates Forward (+)

14191330 .. 14193059

Gene Structure 1730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCAAAACCAGTTTCAATTGAAGTTTGGAATCCCAATGGGAAATACAGAGTTGTCAGCACAAAACCCATGCCAGGAACTCGCTGGATCAATCTCTTAATCGAGCAAGATTGCAGAGTTGAAATATGCACCCAAAAGAAAACAATTCTGTCTGTTGAGGATATCATTGCTTTGATTGGAGATAAGTGTGATGGAGTTATTGGACAGTTGACAGAGGATTGGGGAGAGACTTTGTTCTCAGCACTGAGCAGAGCAGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGCTATAACAATGTTGATGTTAATGCTGCTAACAAGTATGGAGTTGCTGTTGGGAACACACCTGGAGTACTTACAGAAACCACAGCAGAGCTAGCAGCTTCACTTTCTTTATCGGCTGCTAGAAGAATTGTTGAAGCGGATGAGTTTATGAGGGCCGGCTTATATGATGGATGGCTTCCTAATCTGTTTGTGGGAAACTTGCTCAAAGGGCAAACTGTCGGTGTGATTGGAGCTGGCCGTATAGGTTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATCGATCTGTACCAGGCTACCCGGCTAGAAAAGTTTGTTACAGCTTACGGTCAGTTCCTAAAAGCCAACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

219

Amino Acids

23.69

Weight (kDa)

9.16

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	34 - 139	1.1e-15	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	130 - 198	1.8e-12	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0028012)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30340
pyrus_communis	pycom10g10730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	520
AfaI	GTAC	2 cut(s)	354, 594
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	6 cut(s)	18, 23, 122, 419, 557, 565
AjnI	CCWGG	3 cut(s)	73, 346, 595
AluBI	AGCT	5 cut(s)	266, 376, 383, 518, 627
AluI	AGCT	5 cut(s)	266, 376, 383, 518, 627
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	438, 520
ApeKI	GCWGC	3 cut(s)	311, 380, 401
AspS9I	GGNCC	1 cut(s)	438
AsuC2I	CCSGG	1 cut(s)	605
AsuNHI	GCTAGC	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	298, 388, 392
BccI	CCATC	4 cut(s)	185, 446, 450, 544
BceAI	ACGGC	1 cut(s)	507
BciT130I	CCWGG	3 cut(s)	75, 348, 597
BcnI	CCSGG	1 cut(s)	605
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	377, 405, 609
BisI	GCNGC	3 cut(s)	312, 381, 402
BlsI	GCNGC	3 cut(s)	313, 382, 403
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	4 cut(s)	75, 348, 597, 605
BmgT120I	GGNCC	1 cut(s)	438
BmrFI	CCNGG	4 cut(s)	75, 348, 597, 605
BmtI	GCTAGC	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	586
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	75, 348, 597
BseCI	ATCGAT	1 cut(s)	586
BseGI	GGATG	2 cut(s)	430, 461
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	236, 252
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	3 cut(s)	298, 388, 392
BshFI	GGCC	2 cut(s)	440, 522
BshVI	ATCGAT	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	441, 605
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	440, 522
Bsp143I	GATC	2 cut(s)	87, 587
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	2 cut(s)	440, 522
BspCNI	CTCAG	2 cut(s)	237, 251
BspDI	ATCGAT	1 cut(s)	586
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	440
BssMI	GATC	2 cut(s)	87, 587
Bst2UI	CCWGG	3 cut(s)	75, 348, 597
Bst4CI	ACNGT	4 cut(s)	207, 502, 633, 654
BstC8I	GCNNGC	3 cut(s)	378, 442, 520
BstDEI	CTNAG	2 cut(s)	238, 245
BstF5I	GGATG	2 cut(s)	430, 461
BstKTI	GATC	2 cut(s)	90, 590
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	87, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 493
BstNI	CCWGG	3 cut(s)	75, 348, 597
BstSCI	CCNGG	4 cut(s)	73, 346, 595, 603
BstV1I	GCAGC	3 cut(s)	298, 388, 392
BstXI	CCANNNNNNTGG	1 cut(s)	550
Bsu15I	ATCGAT	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	440, 522
BsuTUI	ATCGAT	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	430, 461
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	378, 442, 520
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	353, 593
CviAII	CATG	2 cut(s)	70, 277
CviQI	GTAC	2 cut(s)	353, 593
DdeI	CTNAG	2 cut(s)	238, 245
DpnI	GATC	2 cut(s)	89, 589
DpnII	GATC	2 cut(s)	87, 587
EaeI	YGGCCR	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	73, 346, 595
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	2 cut(s)	73, 280
FatI	CATG	2 cut(s)	69, 276
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	3 cut(s)	312, 381, 402
FokI	GGATG	2 cut(s)	437, 468
Fsp4HI	GCNGC	3 cut(s)	312, 381, 402
FspBI	CTAG	3 cut(s)	377, 405, 609
GluI	GCNGC	3 cut(s)	312, 381, 402
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	440, 522
HapII	CCGG	2 cut(s)	441, 605
Hin1II	CATG	2 cut(s)	73, 280
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	441, 605
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	4 cut(s)	207, 502, 633, 654
HpyCH4V	TGCA	3 cut(s)	114, 129, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 493
HpyF3I	CTNAG	2 cut(s)	238, 245
Hsp92II	CATG	2 cut(s)	73, 280
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	87, 587
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	298, 388, 392
MaeI	CTAG	3 cut(s)	377, 405, 609
MaeIII	GTNAC	2 cut(s)	272, 620
MalI	GATC	2 cut(s)	89, 589
MboI	GATC	2 cut(s)	87, 587
MboII	GAAGA	1 cut(s)	420
MfeI	CAATTG	1 cut(s)	18
MluCI	AATT	4 cut(s)	18, 144, 411, 576
MnlI	CCTC	4 cut(s)	151, 208, 251, 429
MroNI	GCCGGC	1 cut(s)	440
MseI	TTAA	2 cut(s)	98, 306
MspI	CCGG	2 cut(s)	441, 605
MspR9I	CCNGG	4 cut(s)	75, 348, 597, 605
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	3 cut(s)	75, 348, 597
MwoI	GCNNNNNNNGC	2 cut(s)	377, 493
NaeI	GCCGGC	1 cut(s)	442
NciI	CCSGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	2 cut(s)	87, 587
NgoMIV	GCCGGC	1 cut(s)	440
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	73, 280
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	313, 382, 403
Psp6I	CCWGG	3 cut(s)	73, 346, 595
PspGI	CCWGG	3 cut(s)	73, 346, 595
PspPI	GGNCC	1 cut(s)	438
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
RsaI	GTAC	2 cut(s)	354, 594
RsaNI	GTAC	2 cut(s)	353, 593
SaqAI	TTAA	2 cut(s)	98, 306
SatI	GCNGC	3 cut(s)	312, 381, 402
Sau3AI	GATC	2 cut(s)	87, 587
Sau96I	GGNCC	1 cut(s)	438
ScaI	AGTACT	1 cut(s)	354
ScrFI	CCNGG	4 cut(s)	75, 348, 597, 605
SetI	ASST	9 cut(s)	268, 349, 378, 385, 520, 532, 562, 576, 629
Sse9I	AATT	4 cut(s)	18, 144, 411, 576
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	3 cut(s)	377, 405, 609
StyD4I	CCNGG	4 cut(s)	73, 346, 595, 603
TaaI	ACNGT	4 cut(s)	207, 502, 633, 654
TaqI	TCGA	2 cut(s)	102, 586
TasI	AATT	4 cut(s)	18, 144, 411, 576
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	98, 306
Tru9I	TTAA	2 cut(s)	98, 306
TscAI	CASTG	1 cut(s)	249
TseI	GCWGC	3 cut(s)	311, 380, 401
TspDTI	ATGAA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	81
XspI	CTAG	3 cut(s)	377, 405, 609
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.