Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Reverse (-)

21228947 .. 21232770

Gene Structure 3824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30340.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCAAACCAGTTTCAGTTGAAGTGTACAACCCAAATGGGAAGTACAGAGTTGTCAGCACAAAACTCATGCCTGGAACTCGCTGGATCAATCTCTTAATTGAACAAGACTGTAGAGTTGAAATATGCACCCAGAAGAAAACTATTCTGTCTGTTGAGGATATTATTGCTCTTATTGGTAACAAGTGTGATGGAGTAATTGGGCAGTTGACTGAAGACTGGGGTGAGACTTTGTTCTCAGCTCTGAGCAGAGCTGGAGGTAAAGCTTTCAGTAACATGGCTGTTGGGTATAACAATGTTGATGTCAATGCTGCTAACAAGTATGGAGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGCTAGCAGCTTCACTCTCAGTATCTGCTGCTAGGAGAATAGTGGAAGCAGATGAGTTTATGAGGGCAGGTTTATATGATGGATGGCTTCCCAATCTGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTTATTGGAGCTGGTCGTATAGGGTCTGCATATGCTAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTCTACCAGGCTACACGACTAGAAAAGTTTGTTACAGCTTATGGTCAGTTCCTACAAGCCAATGGTGAAACTCCTGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTCCGAGAAGCAGATGTGATAAGCCTTCACCCAATTCTCGATAAAACAACTTATCATCTGATCAACAAAGAAAGATTAGCAACGATGAAGAAGGAAGCAGTCCTGGTTAACTGTAGCAGAGGGCCTGTGGTTGACGAGGTCGCTCTTGTGGAGCATTTGAAACAGAATCCCATGTTTCGAGTTGGTCTTGATGTCTTTGAGGATGAGCCCTACATGAAACCTGGGCTTGCCGACATGAAGAATGCTATCGTGGTTCCTCACATTGCTTCAGCTTCTAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTCAACGTCCTGGGGAAAATCAAAGGATATCCAGTTTGGTCTGATCCGAACCGGGTAGAACCATTCCTGAACGAGAATGCTCCACCACCAGCTGCCAGTCCTAGCATTGTTAACGCCAAGGCCTTAGGATTACCAGTTTCAAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

387

Amino Acids

42.12

Weight (kDa)

7.61

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	35 - 146	1.4e-15	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	130 - 245	6.5e-14	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AclWI	GGATC	2 cut(s)	95, 1049
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	234, 951
AfaI	GTAC	3 cut(s)	29, 47, 354
AgsI	TTSAA	7 cut(s)	23, 104, 122, 557, 565, 859, 1152
AjnI	CCWGG	6 cut(s)	73, 346, 594, 801, 919, 1020
AluBI	AGCT	9 cut(s)	242, 254, 266, 376, 383, 518, 626, 971, 1103
AluI	AGCT	9 cut(s)	242, 254, 266, 376, 383, 518, 626, 971, 1103
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	95, 1049
AlwNI	CAGNNNCTG	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	984
AoxI	GGCC	3 cut(s)	3, 821, 1131
ApeKI	GCWGC	6 cut(s)	311, 380, 401, 680, 1007, 1103
AspS9I	GGNCC	1 cut(s)	821
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	3 cut(s)	236, 665, 719
AsuNHI	GCTAGC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	984
AxyI	CCTNAGG	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	6 cut(s)	298, 388, 392, 692, 994, 1090
BccI	CCATC	4 cut(s)	185, 446, 450, 544
BciT130I	CCWGG	6 cut(s)	75, 348, 596, 803, 921, 1022
BclI	TGATCA	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	5 cut(s)	377, 405, 543, 608, 1113
BfmI	CTRYAG	3 cut(s)	112, 366, 811
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
BlsI	GCNGC	6 cut(s)	313, 382, 403, 682, 1009, 1105
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	7 cut(s)	75, 348, 596, 803, 921, 1022, 1064
BmeT110I	CYCGRG	1 cut(s)	984
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	7 cut(s)	75, 348, 596, 803, 921, 1022, 1064
BmrI	ACTGGG	1 cut(s)	229
BmtI	GCTAGC	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	276, 369
BpuMI	CCSGG	1 cut(s)	1064
BsaJI	CCNNGG	3 cut(s)	920, 1021, 1128
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bse1I	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
Bse21I	CCTNAGG	1 cut(s)	1135
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	6 cut(s)	75, 348, 596, 803, 921, 1022
BseDI	CCNNGG	3 cut(s)	920, 1021, 1128
BseGI	GGATG	3 cut(s)	461, 697, 907
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	3 cut(s)	236, 252, 405
BseNI	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
BseXI	GCAGC	6 cut(s)	298, 388, 392, 692, 994, 1090
BshFI	GGCC	3 cut(s)	5, 823, 1133
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	1 cut(s)	984
BsiSI	CCGG	1 cut(s)	1063
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	946, 1093
BsnI	GGCC	3 cut(s)	5, 823, 1133
BsoBI	CYCGRG	1 cut(s)	984
Bsp1286I	GDGCHC	2 cut(s)	702, 909
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	4 cut(s)	87, 586, 759, 1054
BspANI	GGCC	3 cut(s)	5, 823, 1133
BspCNI	CTCAG	3 cut(s)	237, 251, 404
BspLI	GGNNCC	1 cut(s)	954
BspMI	ACCTGC	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	95, 1049
BsrDI	GCAATG	1 cut(s)	960
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
BssECI	CCNNGG	3 cut(s)	920, 1021, 1128
BssMI	GATC	4 cut(s)	87, 586, 759, 1054
BssT1I	CCWWGG	1 cut(s)	1128
Bst2UI	CCWGG	6 cut(s)	75, 348, 596, 803, 921, 1022
Bst4CI	ACNGT	3 cut(s)	113, 502, 812
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	378, 685, 927
BstDEI	CTNAG	5 cut(s)	238, 245, 391, 975, 1135
BstF5I	GGATG	3 cut(s)	461, 697, 907
BstKTI	GATC	4 cut(s)	90, 589, 762, 1057
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	87, 586, 759, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
BstNI	CCWGG	6 cut(s)	75, 348, 596, 803, 921, 1022
BstSCI	CCNGG	7 cut(s)	73, 346, 594, 801, 919, 1020, 1062
BstSFI	CTRYAG	3 cut(s)	112, 366, 811
BstV1I	GCAGC	6 cut(s)	298, 388, 392, 692, 994, 1090
BstV2I	GAAGAC	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	1135
BsuRI	GGCC	3 cut(s)	5, 823, 1133
BtsCI	GGATG	3 cut(s)	461, 697, 907
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	378, 685, 927
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	28, 46, 353
CviAII	CATG	6 cut(s)	70, 277, 688, 871, 913, 934
CviQI	GTAC	3 cut(s)	28, 46, 353
DdeI	CTNAG	5 cut(s)	238, 245, 391, 975, 1135
DpnI	GATC	4 cut(s)	89, 588, 761, 1056
DpnII	GATC	4 cut(s)	87, 586, 759, 1054
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	1128
Eco147I	AGGCCT	1 cut(s)	1133
Eco24I	GRGCYC	1 cut(s)	909
Eco32I	GATATC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	234, 951
Eco81I	CCTNAGG	1 cut(s)	1135
Eco88I	CYCGRG	1 cut(s)	984
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	6 cut(s)	73, 346, 594, 801, 919, 1020
EcoRV	GATATC	1 cut(s)	1040
EcoT14I	CCWWGG	1 cut(s)	1128
EcoT38I	GRGCYC	1 cut(s)	909
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	6 cut(s)	73, 280, 691, 874, 916, 937
FatI	CATG	6 cut(s)	69, 276, 687, 870, 912, 933
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	759
Fnu4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
FokI	GGATG	3 cut(s)	468, 704, 914
FriOI	GRGCYC	1 cut(s)	909
Fsp4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
FspBI	CTAG	5 cut(s)	377, 405, 543, 608, 1113
GluI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
GsuI	CTGGAG	2 cut(s)	276, 369
HaeIII	GGCC	3 cut(s)	5, 823, 1133
HapII	CCGG	1 cut(s)	1063
Hin1II	CATG	6 cut(s)	73, 280, 691, 874, 916, 937
HincII	GTYRAC	4 cut(s)	210, 808, 832, 1123
HindII	GTYRAC	4 cut(s)	210, 808, 832, 1123
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	865, 982
HpaI	GTTAAC	2 cut(s)	808, 1123
HpaII	CCGG	1 cut(s)	1063
HphI	GGTGA	3 cut(s)	236, 665, 719
Hpy166II	GTNNAC	6 cut(s)	28, 210, 808, 832, 981, 1123
Hpy188I	TCNGA	5 cut(s)	246, 704, 759, 1054, 1059
Hpy188III	TCNNGA	5 cut(s)	565, 737, 887, 986, 1078
Hpy8I	GTNNAC	6 cut(s)	28, 210, 808, 832, 981, 1123
HpyAV	CCTTC	4 cut(s)	551, 734, 784, 983
HpyCH4III	ACNGT	3 cut(s)	113, 502, 812
HpyCH4IV	ACGT	1 cut(s)	1017
HpyCH4V	TGCA	2 cut(s)	129, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
HpyF3I	CTNAG	5 cut(s)	238, 245, 391, 975, 1135
HpySE526I	ACGT	1 cut(s)	1017
Hsp92II	CATG	6 cut(s)	73, 280, 691, 874, 916, 937
Ksp22I	TGATCA	1 cut(s)	759
KspAI	GTTAAC	2 cut(s)	808, 1123
Kzo9I	GATC	4 cut(s)	87, 586, 759, 1054
LmnI	GCTCC	4 cut(s)	515, 705, 850, 1096
Lsp1109I	GCAGC	6 cut(s)	298, 388, 392, 692, 994, 1090
MaeI	CTAG	5 cut(s)	377, 405, 543, 608, 1113
MaeII	ACGT	1 cut(s)	1017
MaeIII	GTNAC	4 cut(s)	179, 272, 619, 664
MalI	GATC	4 cut(s)	89, 588, 761, 1056
MboI	GATC	4 cut(s)	87, 586, 759, 1054
MboII	GAAGA	4 cut(s)	148, 227, 799, 949
MhlI	GDGCHC	2 cut(s)	702, 909
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	99, 198, 576, 732
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	151, 251, 429, 688, 812, 829, 892, 966
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	98, 807, 1122
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	1103
MspI	CCGG	1 cut(s)	1063
MspR9I	CCNGG	7 cut(s)	75, 348, 596, 803, 921, 1022, 1064
Mva1269I	GAATGC	2 cut(s)	946, 1093
MvaI	CCWGG	6 cut(s)	75, 348, 596, 803, 921, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
NciI	CCSGG	1 cut(s)	1064
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	4 cut(s)	87, 586, 759, 1054
NheI	GCTAGC	1 cut(s)	376
NlaIII	CATG	6 cut(s)	73, 280, 691, 874, 916, 937
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	1133
PctI	GAATGC	2 cut(s)	946, 1093
PfeI	GAWTC	1 cut(s)	865
PflFI	GACNNNGTC	1 cut(s)	836
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	6 cut(s)	313, 382, 403, 682, 1009, 1105
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
Psp6I	CCWGG	6 cut(s)	73, 346, 594, 801, 919, 1020
PspGI	CCWGG	6 cut(s)	73, 346, 594, 801, 919, 1020
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PstNI	CAGNNNCTG	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	3 cut(s)	29, 47, 354
RsaNI	GTAC	3 cut(s)	28, 46, 353
SaqAI	TTAA	3 cut(s)	98, 807, 1122
SatI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
Sau3AI	GATC	4 cut(s)	87, 586, 759, 1054
Sau96I	GGNCC	1 cut(s)	821
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	7 cut(s)	75, 348, 596, 803, 921, 1022, 1064
SduI	GDGCHC	2 cut(s)	702, 909
SfcI	CTRYAG	3 cut(s)	112, 366, 811
Sfr274I	CTCGAG	1 cut(s)	984
SlaI	CTCGAG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	4 cut(s)	99, 198, 576, 732
SseBI	AGGCCT	1 cut(s)	1133
SspMI	CTAG	5 cut(s)	377, 405, 543, 608, 1113
StuI	AGGCCT	1 cut(s)	1133
StyD4I	CCNGG	7 cut(s)	73, 346, 594, 801, 919, 1020, 1062
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	3 cut(s)	113, 502, 812
TaiI	ACGT	1 cut(s)	1020
TaqI	TCGA	3 cut(s)	738, 877, 985
TasI	AATT	4 cut(s)	99, 198, 576, 732
TatI	WGTACW	3 cut(s)	27, 45, 352
TfiI	GAWTC	1 cut(s)	865
Tru1I	TTAA	3 cut(s)	98, 807, 1122
Tru9I	TTAA	3 cut(s)	98, 807, 1122
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	6 cut(s)	311, 380, 401, 680, 1007, 1103
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	4 cut(s)	584, 800, 929, 950
Tth111I	GACNNNGTC	1 cut(s)	836
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	984
XspI	CTAG	5 cut(s)	377, 405, 543, 608, 1113
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.