Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

14193268 .. 14194214

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10740.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGAAGGAAGCAGTCCTTGTAAACTGTAGCAGAGGGCCTGTGATTGATGAAGTGGCTCTTGTAGAACATTTGAAACAAAACCCTATGTTTCGAGTTGGCCTGGATGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACTTGAAGAATGCTGTTGTGGTACCTCATATTGCTTCCGCTTCCAAGTGGACTCGTGAAGGAATGGCAACACTGGCTGCTCTTAATGTCCTGGGAAAAATTAAAGGATACCCTGTTTGGTCGAATCCAAACCAGGTAGAACCATTTCTCAATGAGAATGCTCCGCCACCAGCTGCCAGTCCTAGCATCGTCAACTCAAAAGCCTTAGGTTTACCAGTTTCAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

126

Amino Acids

13.51

Weight (kDa)

7.87

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	1 cut(s)	169
AciI	CCGC	2 cut(s)	186, 311
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	76, 154, 369
AjnI	CCWGG	4 cut(s)	102, 136, 237, 279
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AoxI	GGCC	2 cut(s)	38, 100
ApeKI	GCWGC	2 cut(s)	224, 320
Asp700I	GAANNNNTTC	1 cut(s)	291
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	352
BanI	GGYRCC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	211, 307
BciT130I	CCWGG	4 cut(s)	104, 138, 239, 281
BciVI	GTATCC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	248
BisI	GCNGC	2 cut(s)	225, 321
BlsI	GCNGC	2 cut(s)	226, 322
Bme1390I	CCNGG	4 cut(s)	104, 138, 239, 281
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	4 cut(s)	104, 138, 239, 281
BmsI	GCATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	137, 238
Bse1I	ACTGG	3 cut(s)	225, 324, 362
Bse21I	CCTNAGG	1 cut(s)	352
BseBI	CCWGG	4 cut(s)	104, 138, 239, 281
BseDI	CCNNGG	2 cut(s)	137, 238
BseGI	GGATG	2 cut(s)	112, 124
BseNI	ACTGG	3 cut(s)	225, 324, 362
BseXI	GCAGC	2 cut(s)	211, 307
BshFI	GGCC	2 cut(s)	40, 102
BshNI	GGYRCC	1 cut(s)	169
BsmI	GAATGC	2 cut(s)	163, 310
BsnI	GGCC	2 cut(s)	40, 102
BspACI	CCGC	2 cut(s)	186, 311
BspANI	GGCC	2 cut(s)	40, 102
BspLI	GGNNCC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	225, 324, 362
BssECI	CCNNGG	2 cut(s)	137, 238
BssSI	CACGAG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	201
Bst2UI	CCWGG	4 cut(s)	104, 138, 239, 281
Bst4CI	ACNGT	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	112, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	4 cut(s)	104, 138, 239, 281
BstSCI	CCNGG	4 cut(s)	102, 136, 237, 279
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	211, 307
Bsu36I	CCTNAGG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	40, 102
BtsCI	GGATG	2 cut(s)	112, 124
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	9 cut(s)	40, 59, 102, 124, 142, 224, 320, 350, 373
CviKI_1	RGCY	9 cut(s)	40, 59, 102, 124, 142, 224, 320, 350, 373
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	102, 136, 237, 279
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	89, 131, 177
FalI	AAGNNNNNCTT	3 cut(s)	35, 45, 77
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	225, 321
FokI	GGATG	2 cut(s)	119, 131
Fsp4HI	GCNGC	2 cut(s)	225, 321
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	225, 321
HaeIII	GGCC	2 cut(s)	40, 102
Hin1II	CATG	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	199, 271
Hpy166II	GTNNAC	4 cut(s)	25, 198, 340, 359
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	4 cut(s)	25, 198, 340, 359
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	133
KpnI	GGTACC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	211, 307
LweI	GCATC	1 cut(s)	342
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	330
MboII	GAAGA	2 cut(s)	16, 166
MluCI	AATT	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	29, 109, 183
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	2 cut(s)	231, 249
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	4 cut(s)	104, 138, 239, 281
Mva1269I	GAATGC	2 cut(s)	163, 310
MvaI	CCWGG	4 cut(s)	104, 138, 239, 281
MwoI	GCNNNNNNNGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	171
PctI	GAATGC	2 cut(s)	163, 310
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	226, 322
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	4 cut(s)	102, 136, 237, 279
PspGI	CCWGG	4 cut(s)	102, 136, 237, 279
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	38
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	231, 249
SatI	GCNGC	2 cut(s)	225, 321
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	104, 138, 239, 281
SetI	ASST	5 cut(s)	139, 175, 285, 322, 358
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	246
SsiI	CCGC	2 cut(s)	186, 311
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	102, 136, 237, 279
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	94, 269
TasI	AATT	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	231, 249
Tru9I	TTAA	2 cut(s)	231, 249
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	2 cut(s)	224, 320
TspDTI	ATGAA	3 cut(s)	17, 66, 146
TspRI	CASTG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.