Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

50617427 .. 50618143

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG396600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGCTGTATCAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATTGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTCAATGTCCTGCTTACATCATTTAAATATGGGTTGAAAAAGAATAAACTTTGGCACCAAAGTACTGACAACAATTACAATGCTATGGTTTACCCTAAAATCAAAGGATATCCAGTTTGGTCTGATGCGAACCGGGTAGAACCATTCCTGAATGAGAATGCTCCACCACCAGCTGCCAGTCCTAGCATTGTTAATAACGCCAAGGCCTTAGGTAATAATAGCTATAAAACTATCAATGACACGCACAGAGGTCGATTTTCTTGGCTGAAAACTCTGTCTCACTGCAGGATTACCAGTTTCAAAGCTTTGAGCATTGATGTAAATGGCCACATTCTGAGCCTTCCTGGTGCAAATGGAGCAATTGTTATGCATGGAAACCAGGCTCTAGCGATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

174

Amino Acids

19.14

Weight (kDa)

9.65

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	67
AccB1I	GGYRCC	2 cut(s)	67, 180
AcoI	YGGCCR	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	2 cut(s)	69, 190
AgsI	TTSAA	2 cut(s)	163, 427
AjnI	CCWGG	3 cut(s)	34, 469, 504
AluBI	AGCT	3 cut(s)	299, 348, 431
AluI	AGCT	3 cut(s)	299, 348, 431
Alw26I	GTCTC	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	330, 451
ApeKI	GCWGC	2 cut(s)	122, 299
Asp718I	GGTACC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	334
BalI	TGGCCA	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	67, 180
BbvI	GCAGC	2 cut(s)	109, 286
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BciT130I	CCWGG	3 cut(s)	36, 471, 506
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	2 cut(s)	309, 512
BfmI	CTRYAG	1 cut(s)	409
BisI	GCNGC	2 cut(s)	123, 300
BlsI	GCNGC	2 cut(s)	124, 301
BmcAI	AGTACT	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	36, 260, 471, 506
BmeT110I	CYCGRG	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	69, 182
BmrFI	CCNGG	4 cut(s)	36, 260, 471, 506
BmsI	GCATC	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	35, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bse1I	ACTGG	3 cut(s)	239, 303, 420
Bse21I	CCTNAGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	36, 471, 506
BseDI	CCNNGG	2 cut(s)	35, 327
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	3 cut(s)	239, 303, 420
BseXI	GCAGC	2 cut(s)	109, 286
BshFI	GGCC	2 cut(s)	332, 453
BshNI	GGYRCC	2 cut(s)	67, 180
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	408
BsmI	GAATGC	2 cut(s)	61, 289
BsnI	GGCC	2 cut(s)	332, 453
BsoBI	CYCGRG	1 cut(s)	99
BspANI	GGCC	2 cut(s)	332, 453
BspCNI	CTCAG	1 cut(s)	453
BspLI	GGNNCC	2 cut(s)	69, 182
BspMAI	CTGCAG	1 cut(s)	413
BspT107I	GGYRCC	2 cut(s)	67, 180
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	239, 303, 420
BssECI	CCNNGG	2 cut(s)	35, 327
BssT1I	CCWWGG	1 cut(s)	327
Bst2UI	CCWGG	3 cut(s)	36, 471, 506
Bst4CI	ACNGT	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	334, 461
BstF5I	GGATG	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 482
BstNI	CCWGG	3 cut(s)	36, 471, 506
BstSCI	CCNGG	4 cut(s)	34, 258, 469, 504
BstSFI	CTRYAG	1 cut(s)	409
BstV1I	GCAGC	2 cut(s)	109, 286
Bsu36I	CCTNAGG	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	332, 453
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	68, 189
CviAII	CATG	2 cut(s)	28, 497
CviQI	GTAC	2 cut(s)	68, 189
DdeI	CTNAG	2 cut(s)	334, 461
DraI	TTTAAA	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	71
Eco81I	CCTNAGG	1 cut(s)	334
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	3 cut(s)	34, 469, 504
EcoRV	GATATC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	2 cut(s)	31, 500
FaiI	YATR	6 cut(s)	29, 156, 212, 351, 494, 498
FatI	CATG	2 cut(s)	27, 496
Fnu4HI	GCNGC	2 cut(s)	123, 300
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	123, 300
FspBI	CTAG	2 cut(s)	309, 512
GluI	GCNGC	2 cut(s)	123, 300
HaeIII	GGCC	2 cut(s)	332, 453
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	2 cut(s)	31, 500
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	96, 217
Hpy188I	TCNGA	2 cut(s)	250, 462
Hpy188III	TCNNGA	3 cut(s)	14, 101, 274
Hpy8I	GTNNAC	2 cut(s)	96, 217
HpyAV	CCTTC	2 cut(s)	98, 476
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	411, 476, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 482
HpyF3I	CTNAG	2 cut(s)	334, 461
Hsp92II	CATG	2 cut(s)	31, 500
KpnI	GGTACC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	292, 482
Lsp1109I	GCAGC	2 cut(s)	109, 286
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	309, 512
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	2 cut(s)	199, 486
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	2 cut(s)	81, 368
Mox20I	TGGCCA	1 cut(s)	453
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	2 cut(s)	150, 318
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	4 cut(s)	36, 260, 471, 506
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	61, 289
MvaI	CCWGG	3 cut(s)	36, 471, 506
MwoI	GCNNNNNNNGC	2 cut(s)	119, 482
NciI	CCSGG	1 cut(s)	260
NlaIII	CATG	2 cut(s)	31, 500
NlaIV	GGNNCC	2 cut(s)	69, 182
NsiI	ATGCAT	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	99
PceI	AGGCCT	1 cut(s)	332
PctI	GAATGC	2 cut(s)	61, 289
PkrI	GCNGC	2 cut(s)	124, 301
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	3 cut(s)	34, 469, 504
PspGI	CCWGG	3 cut(s)	34, 469, 504
PspN4I	GGNNCC	2 cut(s)	69, 182
PstI	CTGCAG	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	69, 190
RsaNI	GTAC	2 cut(s)	68, 189
SaqAI	TTAA	2 cut(s)	150, 318
SatI	GCNGC	2 cut(s)	123, 300
ScaI	AGTACT	1 cut(s)	190
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	4 cut(s)	36, 260, 471, 506
SetI	ASST	8 cut(s)	37, 51, 73, 301, 340, 350, 379, 433
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	409
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmiI	ATTTAAAT	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	199, 486
SseBI	AGGCCT	1 cut(s)	332
SspMI	CTAG	2 cut(s)	309, 512
StuI	AGGCCT	1 cut(s)	332
StyD4I	CCNGG	4 cut(s)	34, 258, 469, 504
StyI	CCWWGG	1 cut(s)	327
SwaI	ATTTAAAT	1 cut(s)	151
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	100, 379
TasI	AATT	2 cut(s)	199, 486
TatI	WGTACW	1 cut(s)	188
Tru1I	TTAA	2 cut(s)	150, 318
Tru9I	TTAA	2 cut(s)	150, 318
TscAI	CASTG	1 cut(s)	413
TseI	GCWGC	2 cut(s)	122, 299
TspDTI	ATGAA	1 cut(s)	44
TspRI	CASTG	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	2 cut(s)	309, 512
ZrmI	AGTACT	1 cut(s)	190
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.