Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

50602834 .. 50606321

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCAAACCAGTTTCAATTGAAGTGTACAACCCAAATGGGAAGTACAGAGTTGTTAGCACAAAACCCATGCCTGGAACTCGCTGGATCAATCTCTTAGTTGAACAAGACTGTAGAGTTGAAATATGCACCCAGAAGAAAACCATTCTATCTGTTGAGGATATCATCGCTCTGATTGGTGACAAGTGTGATGGAGTAATTGGGCAGTTGACAGAAGATTGGGGTGAGACTTTGTTCTCAGCACTGAGCAGAGCTGGAGGTAAAGCTTTCAGTAACATGGCTGTTGGCTATAACAATGTTGATGTCAACGCTGCAAACAAGTATGGAGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGCTGGCAGCTTCACTTTCAGTATCAGCTGCTAGGAGAATAGTGGAAGCAGATGAGTTTATGAGGGCTGGTTTATATGATGGATGGCTTCCCAATCTGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGGTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTGTACCAGGCTACACGACTAGAAAAGTTTGTTACAGCTTATGGTCAGTTCCTACAAGCCAATGGCGAAAGCCCTGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTGCGAGAAGCAGATGTGATAAGCCTTCACCCGATTCTTGATAAAACCACTTATCATCTGATCAACAAGGAAAGATTAGCAACAATGAAGAAGGAAGCAGTCCTTGTTAACTGTAGCAGAGGGCCTGTGGTTGATGAGGTTGCTCTTGTGGAGCATTTGAAACAAAATCCCATGTTTCGAGTTGGTCTTGACGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGAGAAGGAATGGCAACGTTGGCTGCTCTTAATGTCCTGGTACGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

344

Amino Acids

37.71

Weight (kDa)

6.47

Isoelectric Point (pI)

28.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	32 - 340	1.2e-16	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	130 - 322	3.6e-45	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	952
AclI	AACGTT	1 cut(s)	1001
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	956
AcyI	GRCGYC	1 cut(s)	891
AfaI	GTAC	6 cut(s)	29, 47, 354, 593, 954, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	7 cut(s)	18, 23, 104, 122, 557, 565, 859
AjnI	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
AluBI	AGCT	7 cut(s)	254, 266, 376, 383, 401, 518, 626
AluI	AGCT	7 cut(s)	254, 266, 376, 383, 401, 518, 626
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	984
AoxI	GGCC	2 cut(s)	3, 821
ApeKI	GCWGC	6 cut(s)	311, 380, 401, 680, 700, 1007
Asp718I	GGTACC	1 cut(s)	952
AspS9I	GGNCC	1 cut(s)	821
AsuHPI	GGTGA	3 cut(s)	191, 236, 719
AvaI	CYCGRG	1 cut(s)	984
BaeI	ACNNNNGTAYC	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	952
BbvI	GCAGC	6 cut(s)	298, 388, 392, 687, 692, 994
BccI	CCATC	5 cut(s)	185, 446, 450, 544, 953
BciT130I	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BclI	TGATCA	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	405, 608
BfmI	CTRYAG	3 cut(s)	112, 366, 811
BisI	GCNGC	6 cut(s)	312, 381, 402, 681, 701, 1008
BlsI	GCNGC	6 cut(s)	313, 382, 403, 682, 702, 1009
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	5 cut(s)	75, 348, 596, 921, 1022
BmeT110I	CYCGRG	1 cut(s)	984
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	5 cut(s)	75, 348, 596, 921, 1022
BpmI	CTGGAG	2 cut(s)	276, 369
BsaHI	GRCGYC	1 cut(s)	891
BsaJI	CCNNGG	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BseDI	CCNNGG	1 cut(s)	920
BseGI	GGATG	3 cut(s)	461, 697, 907
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	2 cut(s)	236, 252
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	6 cut(s)	298, 388, 392, 687, 692, 994
BshFI	GGCC	2 cut(s)	5, 823
BshNI	GGYRCC	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	984
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	946
BsnI	GGCC	2 cut(s)	5, 823
BsoBI	CYCGRG	1 cut(s)	984
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	87, 586, 759
BspANI	GGCC	2 cut(s)	5, 823
BspCNI	CTCAG	2 cut(s)	237, 251
BspLI	GGNNCC	1 cut(s)	954
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	960
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	920
BssMI	GATC	3 cut(s)	87, 586, 759
BssNI	GRCGYC	1 cut(s)	891
Bst2UI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
Bst4CI	ACNGT	3 cut(s)	113, 502, 812
BstACI	GRCGYC	1 cut(s)	891
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	378, 685, 927
BstDEI	CTNAG	3 cut(s)	97, 238, 245
BstF5I	GGATG	3 cut(s)	461, 697, 907
BstKTI	GATC	3 cut(s)	90, 589, 762
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	87, 586, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
BstNI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BstSCI	CCNGG	5 cut(s)	73, 346, 594, 919, 1020
BstSFI	CTRYAG	3 cut(s)	112, 366, 811
BstV1I	GCAGC	6 cut(s)	298, 388, 392, 687, 692, 994
BstXI	CCANNNNNNTGG	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	5, 823
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	461, 697, 907
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	378, 685, 927
Cfr13I	GGNCC	1 cut(s)	821
Csp6I	GTAC	6 cut(s)	28, 46, 353, 592, 953, 1025
CviAII	CATG	5 cut(s)	70, 277, 688, 871, 913
CviQI	GTAC	6 cut(s)	28, 46, 353, 592, 953, 1025
DdeI	CTNAG	3 cut(s)	97, 238, 245
DpnI	GATC	3 cut(s)	89, 588, 761
DpnII	GATC	3 cut(s)	87, 586, 759
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	984
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	5 cut(s)	73, 280, 691, 874, 916
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	5 cut(s)	69, 276, 687, 870, 912
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	759
Fnu4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 701, 1008
FokI	GGATG	3 cut(s)	468, 704, 914
Fsp4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 701, 1008
FspBI	CTAG	2 cut(s)	405, 608
GluI	GCNGC	6 cut(s)	312, 381, 402, 681, 701, 1008
GsuI	CTGGAG	2 cut(s)	276, 369
HaeIII	GGCC	2 cut(s)	5, 823
Hin1I	GRCGYC	1 cut(s)	891
Hin1II	CATG	5 cut(s)	73, 280, 691, 874, 916
HincII	GTYRAC	3 cut(s)	210, 307, 808
HindII	GTYRAC	3 cut(s)	210, 307, 808
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	733, 982
HpaI	GTTAAC	1 cut(s)	808
HphI	GGTGA	3 cut(s)	191, 236, 719
Hpy166II	GTNNAC	5 cut(s)	28, 210, 307, 808, 981
Hpy188I	TCNGA	2 cut(s)	174, 759
Hpy188III	TCNNGA	4 cut(s)	565, 737, 887, 986
Hpy8I	GTNNAC	5 cut(s)	28, 210, 307, 808, 981
HpyAV	CCTTC	4 cut(s)	551, 734, 784, 983
HpyCH4III	ACNGT	3 cut(s)	113, 502, 812
HpyCH4IV	ACGT	3 cut(s)	891, 1001, 1027
HpyCH4V	TGCA	3 cut(s)	129, 314, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
HpyF3I	CTNAG	3 cut(s)	97, 238, 245
HpySE526I	ACGT	3 cut(s)	891, 1001, 1027
Hsp92I	GRCGYC	1 cut(s)	891
Hsp92II	CATG	5 cut(s)	73, 280, 691, 874, 916
KpnI	GGTACC	1 cut(s)	956
Ksp22I	TGATCA	1 cut(s)	759
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	87, 586, 759
LmnI	GCTCC	2 cut(s)	515, 850
Lsp1109I	GCAGC	6 cut(s)	298, 388, 392, 687, 692, 994
MaeI	CTAG	2 cut(s)	405, 608
MaeII	ACGT	3 cut(s)	891, 1001, 1027
MaeIII	GTNAC	4 cut(s)	179, 272, 619, 664
MalI	GATC	3 cut(s)	89, 588, 761
MboI	GATC	3 cut(s)	87, 586, 759
MboII	GAAGA	4 cut(s)	148, 227, 799, 949
MfeI	CAATTG	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	18, 198, 576
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	151, 251, 429, 688, 812, 829, 892, 966
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	807, 1014
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	401
MspR9I	CCNGG	5 cut(s)	75, 348, 596, 921, 1022
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	946
MvaI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	3 cut(s)	87, 586, 759
NlaIII	CATG	5 cut(s)	73, 280, 691, 874, 916
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	2 cut(s)	179, 664
PaeR7I	CTCGAG	1 cut(s)	984
PctI	GAATGC	1 cut(s)	946
PfeI	GAWTC	1 cut(s)	733
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	6 cut(s)	313, 382, 403, 682, 702, 1009
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
Psp1406I	AACGTT	1 cut(s)	1001
Psp6I	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
PspGI	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	6 cut(s)	29, 47, 354, 593, 954, 1026
RsaNI	GTAC	6 cut(s)	28, 46, 353, 592, 953, 1025
SaqAI	TTAA	2 cut(s)	807, 1014
SatI	GCNGC	6 cut(s)	312, 381, 402, 681, 701, 1008
Sau3AI	GATC	3 cut(s)	87, 586, 759
Sau96I	GGNCC	1 cut(s)	821
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	5 cut(s)	75, 348, 596, 921, 1022
SfcI	CTRYAG	3 cut(s)	112, 366, 811
Sfr274I	CTCGAG	1 cut(s)	984
SlaI	CTCGAG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	3 cut(s)	18, 198, 576
SspMI	CTAG	2 cut(s)	405, 608
StyD4I	CCNGG	5 cut(s)	73, 346, 594, 919, 1020
TaaI	ACNGT	3 cut(s)	113, 502, 812
TaiI	ACGT	3 cut(s)	894, 1004, 1030
TaqI	TCGA	2 cut(s)	877, 985
TasI	AATT	3 cut(s)	18, 198, 576
TatI	WGTACW	3 cut(s)	27, 45, 352
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	2 cut(s)	807, 1014
Tru9I	TTAA	2 cut(s)	807, 1014
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	179, 664
TseI	GCWGC	6 cut(s)	311, 380, 401, 680, 700, 1007
Tsp45I	GTSAC	2 cut(s)	179, 664
TspDTI	ATGAA	3 cut(s)	584, 800, 929
TspRI	CASTG	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	984
XspI	CTAG	2 cut(s)	405, 608
ZraI	GACGTC	1 cut(s)	892
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.