RLG00000001858

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
22153167 .. 22156407
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001858

Sequence Viewer

Length: 1326 bp
ATGGCCAAACCAGTTTCAATTGAAGTGTACAACCCAAATGGGAAGTACAGAGTTGTTAGCACAAAACCCATGCCTGGAACTCGCTGGATCAATCTCTTAGTTGAACAAGACTGTAGAGTTGAAATATGCACCCAGAAGAAAACCATTCTATCTGTTGAGGATATCATCGCTCTGATTGGTGACAAGTGTGATGGAGTAATTGGGCAGTTGACAGAAGACTGGGGTGAGACTTTGTTCTCAGCACTGAGCAGAGCTGGAGGTAAAGCTTTCAGCAACATGGCTGTTGGGTATAACAATGTTGATGTCAATGCTGCTAACAAGTATGGAGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGCTGGCAGCTTCACTCTCAGTATCAGCTGCTAGGAGAATAGTGGAAGCAGATGAGTTTATGAGGGCTGGTTTATATGATGGATGGCTTCCCAATCTGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGGTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTGTACCAGGCTACACGACTAGAAAAGTTTGTTACAGCTTATGGTCAGTTCCTACAAGCCAATGGTGAAAGCCCTGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTCCGAGAAGCAGATGTGATAAGCCTTCACCCAATTCTCGATAAAACCACTTATCATCTGATCAACAAAGAAAGATTAGCGACGATGAAGAAGGAAGCAGTCCTTGTTAACTGTAGCAGAGGGCCTGTGATTGATGAGGTTGCTCTTGTGGAGCATTTGAAACAAAATCCCATGTTTCGAGTTGGTCTTGACGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCCTCCAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTTAATGTCCTGGGTAAAATCAAAGGATATCCAATTTGGTCTGATGCGAACCGGGTAGAACCATTCCTGAATGAGAATGCTTCACCACCAGCTGCCAGTCCTAGCATTGTTAACGCCAAGGCCTTGGGTAATAATATCTATAAAACTATCAATTACACGCACAGACGTCGAATTTCTTTTCTGAAAACTCTGTTTCACTGCAGGATTACCAGTTTCAAGGCTTTGAGCATTGATGTAAATGGCCACATTTTGAGCCTTCCTGGTGCAAATGGAGCAATTGTTATGCATGGAAACCAGGCTCTGTCGATACTGTGA

Protein Analysis

442

Amino Acids

48.23

Weight (kDa)

8.76

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 32 - 347 4.6e-17 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 130 - 322 9.4e-45 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 894, 1180
Acc65I GGTACC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 952
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 2 cut(s) 3, 1252
AcsI RAATTY 1 cut(s) 1182
AcuI CTGAAG 1 cut(s) 956
AcyI GRCGYC 2 cut(s) 891, 1177
AfaI GTAC 5 cut(s) 29, 47, 354, 593, 954
AfiI CCNNNNNNNGG 2 cut(s) 74, 978
AgsI TTSAA 8 cut(s) 18, 23, 104, 122, 557, 565, 859, 1228
AjnI CCWGG 7 cut(s) 73, 346, 594, 919, 1020, 1270, 1305
AluBI AGCT 8 cut(s) 254, 266, 376, 383, 401, 518, 626, 1103
AluI AGCT 8 cut(s) 254, 266, 376, 383, 401, 518, 626, 1103
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 95
AlwNI CAGNNNCTG 1 cut(s) 1312
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 4 cut(s) 3, 821, 1131, 1252
ApeKI GCWGC 6 cut(s) 311, 380, 401, 680, 1007, 1103
ApoI RAATTY 1 cut(s) 1182
Asp718I GGTACC 1 cut(s) 952
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 5 cut(s) 191, 236, 665, 719, 1086
AvaI CYCGRG 1 cut(s) 984
BalI TGGCCA 2 cut(s) 5, 1254
BanI GGYRCC 1 cut(s) 952
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 6 cut(s) 298, 388, 392, 692, 994, 1090
BccI CCATC 5 cut(s) 185, 446, 450, 544, 953
BcgI CGANNNNNNTGC 2 cut(s) 1160, 1194
BciT130I CCWGG 7 cut(s) 75, 348, 596, 921, 1022, 1272, 1307
BclI TGATCA 1 cut(s) 759
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 3 cut(s) 405, 608, 1113
BfmI CTRYAG 4 cut(s) 112, 366, 811, 1210
BisI GCNGC 6 cut(s) 312, 381, 402, 681, 1008, 1104
BlsI GCNGC 6 cut(s) 313, 382, 403, 682, 1009, 1105
BmcAI AGTACT 1 cut(s) 354
Bme1390I CCNGG 8 cut(s) 75, 348, 596, 921, 1022, 1064, 1272, 1307
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 1 cut(s) 954
BmrFI CCNGG 8 cut(s) 75, 348, 596, 921, 1022, 1064, 1272, 1307
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 1045
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 2 cut(s) 276, 369
BpuMI CCSGG 1 cut(s) 1064
BsaHI GRCGYC 2 cut(s) 891, 1177
BsaJI CCNNGG 4 cut(s) 920, 1021, 1128, 1134
BsaXI ACNNNNNCTCC 4 cut(s) 318, 348, 1275, 1305
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 978
Bse1I ACTGG 4 cut(s) 11, 224, 1107, 1221
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 7 cut(s) 75, 348, 596, 921, 1022, 1272, 1307
BseDI CCNNGG 4 cut(s) 920, 1021, 1128, 1134
BseGI GGATG 3 cut(s) 461, 697, 907
BseLI CCNNNNNNNGG 2 cut(s) 74, 978
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 3 cut(s) 236, 252, 405
BseNI ACTGG 4 cut(s) 11, 224, 1107, 1221
BseXI GCAGC 6 cut(s) 298, 388, 392, 692, 994, 1090
BshFI GGCC 4 cut(s) 5, 823, 1133, 1254
BshNI GGYRCC 1 cut(s) 952
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 1 cut(s) 1063
BslI CCNNNNNNNGG 2 cut(s) 74, 978
BsmAI GTCTC 1 cut(s) 221
BsmI GAATGC 2 cut(s) 946, 1093
BsnI GGCC 4 cut(s) 5, 823, 1133, 1254
BsoBI CYCGRG 1 cut(s) 984
Bsp1286I GDGCHC 1 cut(s) 702
Bsp1407I TGTACA 1 cut(s) 27
Bsp143I GATC 3 cut(s) 87, 586, 759
BspANI GGCC 4 cut(s) 5, 823, 1133, 1254
BspCNI CTCAG 3 cut(s) 237, 251, 404
BspLI GGNNCC 1 cut(s) 954
BspMAI CTGCAG 1 cut(s) 1214
BspPI GGATC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 27
BsrI ACTGG 4 cut(s) 11, 224, 1107, 1221
BssECI CCNNGG 4 cut(s) 920, 1021, 1128, 1134
BssMI GATC 3 cut(s) 87, 586, 759
BssNI GRCGYC 2 cut(s) 891, 1177
BssT1I CCWWGG 2 cut(s) 1128, 1134
Bst2UI CCWGG 7 cut(s) 75, 348, 596, 921, 1022, 1272, 1307
Bst4CI ACNGT 4 cut(s) 113, 502, 812, 1323
BstACI GRCGYC 2 cut(s) 891, 1177
BstAUI TGTACA 1 cut(s) 27
BstC8I GCNNGC 3 cut(s) 378, 685, 927
BstDEI CTNAG 4 cut(s) 97, 238, 245, 391
BstF5I GGATG 3 cut(s) 461, 697, 907
BstKTI GATC 3 cut(s) 90, 589, 762
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 3 cut(s) 87, 586, 759
BstMWI GCNNNNNNNGC 4 cut(s) 377, 493, 1004, 1283
BstNI CCWGG 7 cut(s) 75, 348, 596, 921, 1022, 1272, 1307
BstSCI CCNGG 8 cut(s) 73, 346, 594, 919, 1020, 1062, 1270, 1305
BstSFI CTRYAG 4 cut(s) 112, 366, 811, 1210
BstV1I GCAGC 6 cut(s) 298, 388, 392, 692, 994, 1090
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 2 cut(s) 550, 1135
BsuRI GGCC 4 cut(s) 5, 823, 1133, 1254
BtgZI GCGATG 1 cut(s) 151
BtsCI GGATG 3 cut(s) 461, 697, 907
BtsI GCAGTG 1 cut(s) 1207
BtsIMutI CAGTG 2 cut(s) 242, 1207
Cac8I GCNNGC 3 cut(s) 378, 685, 927
CaiI CAGNNNCTG 1 cut(s) 1312
Cfr13I GGNCC 1 cut(s) 821
Csp6I GTAC 5 cut(s) 28, 46, 353, 592, 953
CviAII CATG 6 cut(s) 70, 277, 688, 871, 913, 1298
CviQI GTAC 5 cut(s) 28, 46, 353, 592, 953
DdeI CTNAG 4 cut(s) 97, 238, 245, 391
DpnI GATC 3 cut(s) 89, 588, 761
DpnII GATC 3 cut(s) 87, 586, 759
EaeI YGGCCR 2 cut(s) 3, 1252
Eco130I CCWWGG 2 cut(s) 1128, 1134
Eco147I AGGCCT 1 cut(s) 1133
Eco32I GATATC 2 cut(s) 163, 1040
Eco57I CTGAAG 1 cut(s) 956
Eco88I CYCGRG 1 cut(s) 984
EcoO109I RGGNCCY 1 cut(s) 821
EcoRII CCWGG 7 cut(s) 73, 346, 594, 919, 1020, 1270, 1305
EcoRV GATATC 2 cut(s) 163, 1040
EcoT14I CCWWGG 2 cut(s) 1128, 1134
EcoT22I ATGCAT 1 cut(s) 1299
ErhI CCWWGG 2 cut(s) 1128, 1134
FaeI CATG 6 cut(s) 73, 280, 691, 874, 916, 1301
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FatI CATG 6 cut(s) 69, 276, 687, 870, 912, 1297
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 6 cut(s) 312, 381, 402, 681, 1008, 1104
FokI GGATG 3 cut(s) 468, 704, 914
Fsp4HI GCNGC 6 cut(s) 312, 381, 402, 681, 1008, 1104
FspBI CTAG 3 cut(s) 405, 608, 1113
GluI GCNGC 6 cut(s) 312, 381, 402, 681, 1008, 1104
GsuI CTGGAG 2 cut(s) 276, 369
HaeIII GGCC 4 cut(s) 5, 823, 1133, 1254
HapII CCGG 1 cut(s) 1063
Hin1I GRCGYC 2 cut(s) 891, 1177
Hin1II CATG 6 cut(s) 73, 280, 691, 874, 916, 1301
HincII GTYRAC 3 cut(s) 210, 808, 1123
HindII GTYRAC 3 cut(s) 210, 808, 1123
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 982
HpaI GTTAAC 2 cut(s) 808, 1123
HpaII CCGG 1 cut(s) 1063
HphI GGTGA 5 cut(s) 191, 236, 665, 719, 1086
Hpy166II GTNNAC 5 cut(s) 28, 210, 808, 981, 1123
Hpy188I TCNGA 5 cut(s) 174, 704, 759, 1054, 1194
Hpy188III TCNNGA 5 cut(s) 565, 737, 887, 986, 1078
Hpy8I GTNNAC 5 cut(s) 28, 210, 808, 981, 1123
Hpy99I CGWCG 2 cut(s) 784, 1182
HpyAV CCTTC 5 cut(s) 551, 734, 784, 983, 1277
HpyCH4III ACNGT 4 cut(s) 113, 502, 812, 1323
HpyCH4IV ACGT 2 cut(s) 891, 1177
HpyCH4V TGCA 5 cut(s) 129, 536, 1212, 1277, 1297
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 493, 1004, 1283
HpyF3I CTNAG 4 cut(s) 97, 238, 245, 391
HpySE526I ACGT 2 cut(s) 891, 1177
Hsp92I GRCGYC 2 cut(s) 891, 1177
Hsp92II CATG 6 cut(s) 73, 280, 691, 874, 916, 1301
KpnI GGTACC 1 cut(s) 956
Ksp22I TGATCA 1 cut(s) 759
KspAI GTTAAC 2 cut(s) 808, 1123
Kzo9I GATC 3 cut(s) 87, 586, 759
LmnI GCTCC 4 cut(s) 515, 705, 850, 1283
Lsp1109I GCAGC 6 cut(s) 298, 388, 392, 692, 994, 1090
LweI GCATC 1 cut(s) 1045
MaeI CTAG 3 cut(s) 405, 608, 1113
MaeII ACGT 2 cut(s) 891, 1177
MaeIII GTNAC 3 cut(s) 179, 619, 664
MalI GATC 3 cut(s) 89, 588, 761
MboI GATC 3 cut(s) 87, 586, 759
MboII GAAGA 4 cut(s) 148, 227, 799, 949
MfeI CAATTG 2 cut(s) 18, 1287
MhlI GDGCHC 1 cut(s) 702
MlsI TGGCCA 2 cut(s) 5, 1254
MluCI AATT 8 cut(s) 18, 198, 576, 732, 1044, 1162, 1182, 1287
MluNI TGGCCA 2 cut(s) 5, 1254
MlyI GAGTC 1 cut(s) 976
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 9 cut(s) 151, 251, 429, 688, 812, 829, 892, 966, 982
Mox20I TGGCCA 2 cut(s) 5, 1254
Mph1103I ATGCAT 1 cut(s) 1299
MscI TGGCCA 2 cut(s) 5, 1254
MseI TTAA 3 cut(s) 807, 1014, 1122
Msp20I TGGCCA 2 cut(s) 5, 1254
MspA1I CMGCKG 2 cut(s) 401, 1103
MspI CCGG 1 cut(s) 1063
MspR9I CCNGG 8 cut(s) 75, 348, 596, 921, 1022, 1064, 1272, 1307
MunI CAATTG 2 cut(s) 18, 1287
Mva1269I GAATGC 2 cut(s) 946, 1093
MvaI CCWGG 7 cut(s) 75, 348, 596, 921, 1022, 1272, 1307
MwoI GCNNNNNNNGC 4 cut(s) 377, 493, 1004, 1283
NciI CCSGG 1 cut(s) 1064
NdeI CATATG 1 cut(s) 538
NdeII GATC 3 cut(s) 87, 586, 759
NlaIII CATG 6 cut(s) 73, 280, 691, 874, 916, 1301
NlaIV GGNNCC 1 cut(s) 954
NmuCI GTSAC 2 cut(s) 179, 664
NsiI ATGCAT 1 cut(s) 1299
PaeR7I CTCGAG 1 cut(s) 984
PceI AGGCCT 1 cut(s) 1133
PctI GAATGC 2 cut(s) 946, 1093
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 6 cut(s) 313, 382, 403, 682, 1009, 1105
PleI GAGTC 1 cut(s) 976
PpsI GAGTC 1 cut(s) 976
Psp6I CCWGG 7 cut(s) 73, 346, 594, 919, 1020, 1270, 1305
PspGI CCWGG 7 cut(s) 73, 346, 594, 919, 1020, 1270, 1305
PspN4I GGNNCC 1 cut(s) 954
PspPI GGNCC 1 cut(s) 821
PsrI GAACNNNNNNTAC 2 cut(s) 563, 595
PstI CTGCAG 1 cut(s) 1214
PstNI CAGNNNCTG 1 cut(s) 1312
PvuII CAGCTG 2 cut(s) 401, 1103
RsaI GTAC 5 cut(s) 29, 47, 354, 593, 954
RsaNI GTAC 5 cut(s) 28, 46, 353, 592, 953
SaqAI TTAA 3 cut(s) 807, 1014, 1122
SatI GCNGC 6 cut(s) 312, 381, 402, 681, 1008, 1104
Sau3AI GATC 3 cut(s) 87, 586, 759
Sau96I GGNCC 1 cut(s) 821
ScaI AGTACT 1 cut(s) 354
SchI GAGTC 1 cut(s) 976
ScrFI CCNGG 8 cut(s) 75, 348, 596, 921, 1022, 1064, 1272, 1307
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 1 cut(s) 1045
SfcI CTRYAG 4 cut(s) 112, 366, 811, 1210
Sfr274I CTCGAG 1 cut(s) 984
SlaI CTCGAG 1 cut(s) 984
SmlI CTYRAG 1 cut(s) 984
SmoI CTYRAG 1 cut(s) 984
Sse9I AATT 8 cut(s) 18, 198, 576, 732, 1044, 1162, 1182, 1287
SseBI AGGCCT 1 cut(s) 1133
SspMI CTAG 3 cut(s) 405, 608, 1113
StuI AGGCCT 1 cut(s) 1133
StyD4I CCNGG 8 cut(s) 73, 346, 594, 919, 1020, 1062, 1270, 1305
StyI CCWWGG 2 cut(s) 1128, 1134
TaaI ACNGT 4 cut(s) 113, 502, 812, 1323
TaiI ACGT 2 cut(s) 894, 1180
TaqI TCGA 5 cut(s) 738, 877, 985, 1180, 1316
TasI AATT 8 cut(s) 18, 198, 576, 732, 1044, 1162, 1182, 1287
TatI WGTACW 3 cut(s) 27, 45, 352
Tru1I TTAA 3 cut(s) 807, 1014, 1122
Tru9I TTAA 3 cut(s) 807, 1014, 1122
TscAI CASTG 2 cut(s) 249, 1214
TseFI GTSAC 2 cut(s) 179, 664
TseI GCWGC 6 cut(s) 311, 380, 401, 680, 1007, 1103
Tsp45I GTSAC 2 cut(s) 179, 664
TspDTI ATGAA 3 cut(s) 584, 800, 929
TspRI CASTG 2 cut(s) 249, 1214
XapI RAATTY 1 cut(s) 1182
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 984
XspI CTAG 3 cut(s) 405, 608, 1113
ZraI GACGTC 2 cut(s) 892, 1178
ZrmI AGTACT 1 cut(s) 354
Zsp2I ATGCAT 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.