Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

65616 .. 68838

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000144.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

atggccaaaccagtttcaattgaagtgtacaacccaaatgggaagtacagagttgttagcacaaaacccatgcctggaactcgctggatcaatctcttagttgaacaagactgtagagttgaaatatgcacccagaagaaaaccattctatctgttgaggatatcatcgctctgattggtgacaagtgtgatggagtaattgggcagttgacagaagactggggtgagactttgttctcagcactgagcagagctggaggtaaagctttcagtaacatggctgttgggtataacaatgttgatgtcaatgctgctaacaagtatggagttgctgttggaaacactcctggagtacttacagaaactacagcagagctggcagcttcactctcagtaacagctgctaggagaatagtggaagcagatgagtttatgagggctggtttatatgatggatggcttcccaatctgtttgtgggaaacttgctaaaagggcagactgttggtgtgattggagctggtcgtatagggtctgcatatgccagaatgatggttgaaggtttcaagatgaacctaatttactatgatctgtaccaggctacacgactagaaaagtttgttacagcttatggtcagttcctacaagccaatggcgaaagccctgtgacttggaaaagagcagcaagcatggatgaggtgctgcgagaagcagatgtgataagccttcacccgattcttgataaaaccacttatcatctgatcaacaaggaaagattagcaacaatgaagaaggaagcagtccttgttaactgtagcagagggcccgtggttgatgaggttgctcttgtggagcatttgaaacaaaatcccatgtttcgagttggtcttgatgtctttgaggatgagccttacatgaaacctgggcttgccgacctgaagaatgccatcgtggtacctcacattgcttctgcttccaagtggactcgagaaggaatggcaacattggctgctcttaatgtcctgggtaaaatcaaaggatatccagtttggtctgatgcgaaccgggtagaaccattcctgaatgagaatgctccaccaccagctgccagtcctagcattgttaatgccaaggccttgggattaccagtttcaaggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

386

Amino Acids

42.06

Weight (kDa)

6.92

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	952
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	5 cut(s)	29, 47, 354, 593, 954
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	8 cut(s)	18, 23, 104, 122, 557, 565, 859, 1152
AjnI	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
AluBI	AGCT	8 cut(s)	254, 266, 376, 383, 401, 518, 626, 1103
AluI	AGCT	8 cut(s)	254, 266, 376, 383, 401, 518, 626, 1103
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	984
AoxI	GGCC	3 cut(s)	3, 821, 1131
ApaI	GGGCCC	1 cut(s)	825
ApeKI	GCWGC	7 cut(s)	311, 380, 401, 680, 700, 1007, 1103
Asp718I	GGTACC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	821, 822
AsuC2I	CCSGG	1 cut(s)	1064
AsuHPI	GGTGA	3 cut(s)	191, 236, 719
AvaI	CYCGRG	1 cut(s)	984
BaeGI	GKGCMC	1 cut(s)	825
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	952
BanII	GRGCYC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	222
BbvI	GCAGC	7 cut(s)	298, 388, 392, 687, 692, 994, 1090
BccI	CCATC	5 cut(s)	185, 446, 450, 544, 953
BciT130I	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BclI	TGATCA	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	1064
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	405, 608, 1113
BfmI	CTRYAG	3 cut(s)	112, 366, 811
BisI	GCNGC	7 cut(s)	312, 381, 402, 681, 701, 1008, 1104
BlsI	GCNGC	7 cut(s)	313, 382, 403, 682, 702, 1009, 1105
BmcAI	AGTACT	1 cut(s)	354
Bme1390I	CCNGG	6 cut(s)	75, 348, 596, 921, 1022, 1064
BmeT110I	CYCGRG	1 cut(s)	984
BmgT120I	GGNCC	2 cut(s)	821, 822
BmiI	GGNNCC	2 cut(s)	823, 954
BmrFI	CCNGG	6 cut(s)	75, 348, 596, 921, 1022, 1064
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	1045
BmuI	ACTGGG	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	2 cut(s)	276, 369
BpuMI	CCSGG	1 cut(s)	1064
BsaJI	CCNNGG	5 cut(s)	825, 920, 1021, 1128, 1134
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
Bse3DI	GCAATG	1 cut(s)	960
BseBI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BseDI	CCNNGG	5 cut(s)	825, 920, 1021, 1128, 1134
BseGI	GGATG	3 cut(s)	461, 697, 907
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	960
BseMII	CTCAG	3 cut(s)	236, 252, 405
BseNI	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
BseSI	GKGCMC	1 cut(s)	825
BseXI	GCAGC	7 cut(s)	298, 388, 392, 687, 692, 994, 1090
BshFI	GGCC	3 cut(s)	5, 823, 1133
BshNI	GGYRCC	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	984
BsiSI	CCGG	1 cut(s)	1063
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	946, 1093
BsnI	GGCC	3 cut(s)	5, 823, 1133
BsoBI	CYCGRG	1 cut(s)	984
Bsp120I	GGGCCC	1 cut(s)	821
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	3 cut(s)	87, 586, 759
BspANI	GGCC	3 cut(s)	5, 823, 1133
BspCNI	CTCAG	3 cut(s)	237, 251, 404
BspLI	GGNNCC	2 cut(s)	823, 954
BspPI	GGATC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	960
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	5 cut(s)	11, 224, 1043, 1107, 1145
BssECI	CCNNGG	5 cut(s)	825, 920, 1021, 1128, 1134
BssMI	GATC	3 cut(s)	87, 586, 759
BssT1I	CCWWGG	2 cut(s)	1128, 1134
Bst2UI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
Bst4CI	ACNGT	3 cut(s)	113, 502, 812
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	378, 685, 927
BstDEI	CTNAG	4 cut(s)	97, 238, 245, 391
BstDSI	CCRYGG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	461, 697, 907
BstKTI	GATC	3 cut(s)	90, 589, 762
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	87, 586, 759
BstMWI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
BstNI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
BstSCI	CCNGG	6 cut(s)	73, 346, 594, 919, 1020, 1062
BstSFI	CTRYAG	3 cut(s)	112, 366, 811
BstSLI	GKGCMC	1 cut(s)	825
BstV1I	GCAGC	7 cut(s)	298, 388, 392, 687, 692, 994, 1090
BstV2I	GAAGAC	1 cut(s)	222
BstXI	CCANNNNNNTGG	2 cut(s)	550, 1135
BsuRI	GGCC	3 cut(s)	5, 823, 1133
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	461, 697, 907
BtsIMutI	CAGTG	1 cut(s)	242
Cac8I	GCNNGC	3 cut(s)	378, 685, 927
Cfr13I	GGNCC	2 cut(s)	821, 822
Csp6I	GTAC	5 cut(s)	28, 46, 353, 592, 953
CviAII	CATG	5 cut(s)	70, 277, 688, 871, 913
CviQI	GTAC	5 cut(s)	28, 46, 353, 592, 953
DdeI	CTNAG	4 cut(s)	97, 238, 245, 391
DpnI	GATC	3 cut(s)	89, 588, 761
DpnII	GATC	3 cut(s)	87, 586, 759
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	1128, 1134
Eco147I	AGGCCT	1 cut(s)	1133
Eco24I	GRGCYC	1 cut(s)	825
Eco32I	GATATC	2 cut(s)	163, 1040
Eco57I	CTGAAG	1 cut(s)	956
Eco88I	CYCGRG	1 cut(s)	984
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
EcoRV	GATATC	2 cut(s)	163, 1040
EcoT14I	CCWWGG	2 cut(s)	1128, 1134
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	1128, 1134
FaeI	CATG	5 cut(s)	73, 280, 691, 874, 916
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	5 cut(s)	69, 276, 687, 870, 912
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	759
Fnu4HI	GCNGC	7 cut(s)	312, 381, 402, 681, 701, 1008, 1104
FokI	GGATG	3 cut(s)	468, 704, 914
FriOI	GRGCYC	1 cut(s)	825
Fsp4HI	GCNGC	7 cut(s)	312, 381, 402, 681, 701, 1008, 1104
FspBI	CTAG	3 cut(s)	405, 608, 1113
GluI	GCNGC	7 cut(s)	312, 381, 402, 681, 701, 1008, 1104
GsuI	CTGGAG	2 cut(s)	276, 369
HaeIII	GGCC	3 cut(s)	5, 823, 1133
HapII	CCGG	1 cut(s)	1063
Hin1II	CATG	5 cut(s)	73, 280, 691, 874, 916
HincII	GTYRAC	2 cut(s)	210, 808
HindII	GTYRAC	2 cut(s)	210, 808
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	2 cut(s)	733, 982
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	1063
HphI	GGTGA	3 cut(s)	191, 236, 719
Hpy166II	GTNNAC	4 cut(s)	28, 210, 808, 981
Hpy188I	TCNGA	3 cut(s)	174, 759, 1054
Hpy188III	TCNNGA	5 cut(s)	565, 737, 887, 986, 1078
Hpy8I	GTNNAC	4 cut(s)	28, 210, 808, 981
HpyAV	CCTTC	4 cut(s)	551, 734, 784, 983
HpyCH4III	ACNGT	3 cut(s)	113, 502, 812
HpyCH4V	TGCA	2 cut(s)	129, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
HpyF3I	CTNAG	4 cut(s)	97, 238, 245, 391
Hsp92II	CATG	5 cut(s)	73, 280, 691, 874, 916
KpnI	GGTACC	1 cut(s)	956
Ksp22I	TGATCA	1 cut(s)	759
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	87, 586, 759
LmnI	GCTCC	3 cut(s)	515, 850, 1096
Lsp1109I	GCAGC	7 cut(s)	298, 388, 392, 687, 692, 994, 1090
LweI	GCATC	1 cut(s)	1045
MaeI	CTAG	3 cut(s)	405, 608, 1113
MaeIII	GTNAC	5 cut(s)	179, 272, 394, 619, 664
MalI	GATC	3 cut(s)	89, 588, 761
MboI	GATC	3 cut(s)	87, 586, 759
MboII	GAAGA	4 cut(s)	148, 227, 799, 949
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	825
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	18, 198, 576
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	8 cut(s)	151, 251, 429, 688, 812, 829, 892, 966
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	807, 1014, 1122
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	401, 1103
MspI	CCGG	1 cut(s)	1063
MspR9I	CCNGG	6 cut(s)	75, 348, 596, 921, 1022, 1064
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	2 cut(s)	946, 1093
MvaI	CCWGG	5 cut(s)	75, 348, 596, 921, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	377, 493, 1004
NciI	CCSGG	1 cut(s)	1064
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	3 cut(s)	87, 586, 759
NlaIII	CATG	5 cut(s)	73, 280, 691, 874, 916
NlaIV	GGNNCC	2 cut(s)	823, 954
NmuCI	GTSAC	2 cut(s)	179, 664
PaeR7I	CTCGAG	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	1133
PctI	GAATGC	2 cut(s)	946, 1093
PfeI	GAWTC	1 cut(s)	733
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	7 cut(s)	313, 382, 403, 682, 702, 1009, 1105
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
Psp6I	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
PspGI	CCWGG	5 cut(s)	73, 346, 594, 919, 1020
PspN4I	GGNNCC	2 cut(s)	823, 954
PspOMI	GGGCCC	1 cut(s)	821
PspPI	GGNCC	2 cut(s)	821, 822
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PvuII	CAGCTG	2 cut(s)	401, 1103
RsaI	GTAC	5 cut(s)	29, 47, 354, 593, 954
RsaNI	GTAC	5 cut(s)	28, 46, 353, 592, 953
SaqAI	TTAA	3 cut(s)	807, 1014, 1122
SatI	GCNGC	7 cut(s)	312, 381, 402, 681, 701, 1008, 1104
Sau3AI	GATC	3 cut(s)	87, 586, 759
Sau96I	GGNCC	2 cut(s)	821, 822
ScaI	AGTACT	1 cut(s)	354
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	6 cut(s)	75, 348, 596, 921, 1022, 1064
SduI	GDGCHC	1 cut(s)	825
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	3 cut(s)	112, 366, 811
Sfr274I	CTCGAG	1 cut(s)	984
SlaI	CTCGAG	1 cut(s)	984
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	3 cut(s)	18, 198, 576
SseBI	AGGCCT	1 cut(s)	1133
SspMI	CTAG	3 cut(s)	405, 608, 1113
StuI	AGGCCT	1 cut(s)	1133
StyD4I	CCNGG	6 cut(s)	73, 346, 594, 919, 1020, 1062
StyI	CCWWGG	2 cut(s)	1128, 1134
TaaI	ACNGT	3 cut(s)	113, 502, 812
TaqI	TCGA	2 cut(s)	877, 985
TasI	AATT	3 cut(s)	18, 198, 576
TatI	WGTACW	3 cut(s)	27, 45, 352
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	3 cut(s)	807, 1014, 1122
Tru9I	TTAA	3 cut(s)	807, 1014, 1122
TscAI	CASTG	1 cut(s)	249
TseFI	GTSAC	2 cut(s)	179, 664
TseI	GCWGC	7 cut(s)	311, 380, 401, 680, 700, 1007, 1103
Tsp45I	GTSAC	2 cut(s)	179, 664
TspDTI	ATGAA	3 cut(s)	584, 800, 929
TspRI	CASTG	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	984
XspI	CTAG	3 cut(s)	405, 608, 1113
ZrmI	AGTACT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.