Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

17225563 .. 17228610

Gene Structure 3048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G166000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCCAAACCAGTTTCAATTGAAGTGTGGAACCCACATGGGAAATACAGAGTTGTCAGCACAAAACCCATGCCTGGAACTCGCTGGATCAATCTCTTAATTGAACAAGACTGCAGAGTTGAAATATGTACCCAGAAGAAAACAATTCTGTCTGTTGAGGATATCATTGCTCTGATTGGGGATAAGTGTGATGGAGTTATTGGACAGCTGACAGAAGATTGGGGAGAGACTTTGTTCTCAGCACTTAGCAGAGCAGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGGTACAACAATGTTGATGTTAATGCTGCTACCAAGTATGGAGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACGGCGGAGCTGGCAGCTTCACTTTCTGTATCAGCTGCTAGAAGAATAGTTGAAGCAGATGAATTTATGAGGGCTGGCTTATATGATGGATGGCTTCCTAACCTGTTTGTGGGAAACTTACTCAAAGGACAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGTTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAAATGAACCTAATTTACTATGATCTGTACCAGGCTACACGGCTAGAAAAGTTTGTTACAGCTTATGCTGAGTTCCTTAAAGCCAATGGTGAACAGCCTGTGACTTGGAAAAGAGCAGCAAGCATGGAGGAGGTGCTTCGAGAAGCAGATGTGATAAGCCTTCACCCAATTCTGGATAAAACCACTTACCATCTAGTCAACAAAGAAAGACTTGCAATCATGAAGAAGGAAGCAGTACTTGTAAACTGTAGCAGAGGGCCTGTGATTGATGAAGTGGCTCTTGTAGAGCATTTGAAACAAAATCCCATGTTTAGAGTTGGTCTGGATGTCTTTGAGGATGAGCCTTACATGAAACCCGGGCTTGCCGACTTGAAGAATGCTATTGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGAATGGCAACACTGGCTGCTCTCAATGTCCTGGGAAAAATTAAAGGATATCCAATTTGGTCAGATCCAAACCAGGTAGAACCATTCCTCAACAAGAATGCTCCACCACCGGCCGCCAGTCCTAGCATTGTTAATGCCAAAGCCTTAGGTTTACCAGTTTCGAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

387

Amino Acids

42.19

Weight (kDa)

7.63

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	952
AccB1I	GGYRCC	1 cut(s)	952
AciI	CCGC	2 cut(s)	371, 1104
AclWI	GGATC	2 cut(s)	95, 1049
AcoI	YGGCCR	2 cut(s)	3, 1101
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	6 cut(s)	130, 290, 354, 593, 801, 954
AfiI	CCNNNNNNNGG	3 cut(s)	74, 475, 736
AgsI	TTSAA	9 cut(s)	18, 23, 104, 122, 419, 557, 565, 859, 937
AjnI	CCWGG	5 cut(s)	73, 346, 594, 1020, 1062
AluBI	AGCT	7 cut(s)	208, 266, 376, 383, 401, 518, 626
AluI	AGCT	7 cut(s)	208, 266, 376, 383, 401, 518, 626
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	95, 1049
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	3 cut(s)	3, 821, 1101
ApeKI	GCWGC	5 cut(s)	311, 380, 401, 680, 1007
ApoI	RAATTY	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	952
AspS9I	GGNCC	1 cut(s)	821
AsuC2I	CCSGG	2 cut(s)	921, 922
AsuHPI	GGTGA	2 cut(s)	665, 719
AvaI	CYCGRG	1 cut(s)	920
AxyI	CCTNAGG	1 cut(s)	1135
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	952
BauI	CACGAG	1 cut(s)	984
BbvI	GCAGC	5 cut(s)	298, 388, 392, 692, 994
BccI	CCATC	5 cut(s)	185, 446, 450, 544, 762
BceAI	ACGGC	2 cut(s)	384, 620
BciT130I	CCWGG	5 cut(s)	75, 348, 596, 1022, 1064
BcnI	CCSGG	2 cut(s)	921, 922
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	4 cut(s)	405, 608, 758, 1113
BfmI	CTRYAG	2 cut(s)	112, 811
BisI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
BlsI	GCNGC	6 cut(s)	313, 382, 403, 682, 1009, 1105
BmcAI	AGTACT	2 cut(s)	354, 801
Bme1390I	CCNGG	7 cut(s)	75, 348, 596, 921, 922, 1022, 1064
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	2 cut(s)	32, 954
BmrFI	CCNGG	7 cut(s)	75, 348, 596, 921, 922, 1022, 1064
BpmI	CTGGAG	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	921, 922
BsaJI	CCNNGG	2 cut(s)	920, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 475, 736
Bse118I	RCCGGY	1 cut(s)	1099
Bse1I	ACTGG	4 cut(s)	11, 1008, 1107, 1145
Bse21I	CCTNAGG	1 cut(s)	1135
Bse3DI	GCAATG	2 cut(s)	165, 960
BseBI	CCWGG	5 cut(s)	75, 348, 596, 1022, 1064
BseDI	CCNNGG	2 cut(s)	920, 1021
BseGI	GGATG	3 cut(s)	461, 895, 907
BseLI	CCNNNNNNNGG	3 cut(s)	74, 475, 736
BseMI	GCAATG	2 cut(s)	165, 960
BseMII	CTCAG	2 cut(s)	252, 624
BseNI	ACTGG	4 cut(s)	11, 1008, 1107, 1145
BseRI	GAGGAG	1 cut(s)	707
BseX3I	CGGCCG	1 cut(s)	1101
BseXI	GCAGC	5 cut(s)	298, 388, 392, 692, 994
Bsh1285I	CGRYCG	1 cut(s)	1104
BshFI	GGCC	3 cut(s)	5, 823, 1103
BshNI	GGYRCC	1 cut(s)	952
BsiEI	CGRYCG	1 cut(s)	1104
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	2 cut(s)	921, 1100
BslI	CCNNNNNNNGG	3 cut(s)	74, 475, 736
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	946, 1093
BsnI	GGCC	3 cut(s)	5, 823, 1103
BsoBI	CYCGRG	1 cut(s)	920
Bsp143I	GATC	3 cut(s)	87, 586, 1054
BspACI	CCGC	2 cut(s)	371, 1104
BspANI	GGCC	3 cut(s)	5, 823, 1103
BspCNI	CTCAG	2 cut(s)	251, 625
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	2 cut(s)	32, 954
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	2 cut(s)	95, 1049
BspT107I	GGYRCC	1 cut(s)	952
BsrDI	GCAATG	2 cut(s)	165, 960
BsrFI	RCCGGY	1 cut(s)	1099
BsrI	ACTGG	4 cut(s)	11, 1008, 1107, 1145
BssAI	RCCGGY	1 cut(s)	1099
BssECI	CCNNGG	2 cut(s)	920, 1021
BssMI	GATC	3 cut(s)	87, 586, 1054
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	5 cut(s)	75, 348, 596, 1022, 1064
Bst4CI	ACNGT	2 cut(s)	502, 812
BstC8I	GCNNGC	4 cut(s)	378, 442, 685, 927
BstDEI	CTNAG	4 cut(s)	238, 245, 633, 1135
BstF5I	GGATG	3 cut(s)	461, 895, 907
BstKTI	GATC	3 cut(s)	90, 589, 1057
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	87, 586, 1054
BstMCI	CGRYCG	1 cut(s)	1104
BstMWI	GCNNNNNNNGC	2 cut(s)	377, 1004
BstNI	CCWGG	5 cut(s)	75, 348, 596, 1022, 1064
BstSCI	CCNGG	7 cut(s)	73, 346, 594, 919, 920, 1020, 1062
BstSFI	CTRYAG	2 cut(s)	112, 811
BstV1I	GCAGC	5 cut(s)	298, 388, 392, 692, 994
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	1054
BstZI	CGGCCG	1 cut(s)	1101
Bsu36I	CCTNAGG	1 cut(s)	1135
BsuRI	GGCC	3 cut(s)	5, 823, 1103
BtsCI	GGATG	3 cut(s)	461, 895, 907
BtsIMutI	CAGTG	1 cut(s)	1001
Cac8I	GCNNGC	4 cut(s)	378, 442, 685, 927
CciI	TCATGA	1 cut(s)	783
Cfr10I	RCCGGY	1 cut(s)	1099
Cfr13I	GGNCC	1 cut(s)	821
Cfr9I	CCCGGG	1 cut(s)	920
CsiI	ACCWGGT	1 cut(s)	1062
Csp6I	GTAC	6 cut(s)	129, 289, 353, 592, 800, 953
CviAII	CATG	7 cut(s)	38, 70, 277, 688, 784, 871, 913
CviQI	GTAC	6 cut(s)	129, 289, 353, 592, 800, 953
DdeI	CTNAG	4 cut(s)	238, 245, 633, 1135
DpnI	GATC	3 cut(s)	89, 588, 1056
DpnII	GATC	3 cut(s)	87, 586, 1054
EaeI	YGGCCR	2 cut(s)	3, 1101
EagI	CGGCCG	1 cut(s)	1101
EciI	GGCGGA	1 cut(s)	386
EclXI	CGGCCG	1 cut(s)	1101
Eco32I	GATATC	2 cut(s)	163, 1040
Eco52I	CGGCCG	1 cut(s)	1101
Eco81I	CCTNAGG	1 cut(s)	1135
Eco88I	CYCGRG	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	821
EcoRII	CCWGG	5 cut(s)	73, 346, 594, 1020, 1062
EcoRV	GATATC	2 cut(s)	163, 1040
FaeI	CATG	7 cut(s)	41, 73, 280, 691, 787, 874, 916
FalI	AAGNNNNNCTT	6 cut(s)	759, 791, 786, 818, 828, 860
FatI	CATG	7 cut(s)	37, 69, 276, 687, 783, 870, 912
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
FokI	GGATG	3 cut(s)	468, 902, 914
Fsp4HI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
FspBI	CTAG	4 cut(s)	405, 608, 758, 1113
GluI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	3 cut(s)	5, 823, 1103
HapII	CCGG	2 cut(s)	921, 1100
Hin1II	CATG	7 cut(s)	41, 73, 280, 691, 787, 874, 916
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	982
HpaII	CCGG	2 cut(s)	921, 1100
HphI	GGTGA	2 cut(s)	665, 719
Hpy166II	GTNNAC	5 cut(s)	656, 763, 808, 981, 1142
Hpy188I	TCNGA	2 cut(s)	174, 1054
Hpy188III	TCNNGA	5 cut(s)	704, 737, 784, 887, 986
Hpy8I	GTNNAC	5 cut(s)	656, 763, 808, 981, 1142
HpyAV	CCTTC	4 cut(s)	551, 734, 784, 983
HpyCH4III	ACNGT	2 cut(s)	502, 812
HpyCH4V	TGCA	3 cut(s)	114, 536, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	377, 1004
HpyF3I	CTNAG	4 cut(s)	238, 245, 633, 1135
Hsp92II	CATG	7 cut(s)	41, 73, 280, 691, 787, 874, 916
KpnI	GGTACC	1 cut(s)	956
Kzo9I	GATC	3 cut(s)	87, 586, 1054
LmnI	GCTCC	3 cut(s)	373, 515, 1096
Lsp1109I	GCAGC	5 cut(s)	298, 388, 392, 692, 994
MabI	ACCWGGT	1 cut(s)	1062
MaeI	CTAG	4 cut(s)	405, 608, 758, 1113
MaeIII	GTNAC	3 cut(s)	272, 619, 664
MalI	GATC	3 cut(s)	89, 588, 1056
MboI	GATC	3 cut(s)	87, 586, 1054
MboII	GAAGA	5 cut(s)	148, 227, 420, 799, 949
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	1 cut(s)	1054
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	8 cut(s)	18, 99, 144, 428, 576, 732, 1029, 1044
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	976
MmeI	TCCRAC	1 cut(s)	316
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	98, 306, 642, 1032, 1122
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	208, 401
MspI	CCGG	2 cut(s)	921, 1100
MspR9I	CCNGG	7 cut(s)	75, 348, 596, 921, 922, 1022, 1064
MunI	CAATTG	1 cut(s)	18
Mva1269I	GAATGC	2 cut(s)	946, 1093
MvaI	CCWGG	5 cut(s)	75, 348, 596, 1022, 1064
MwoI	GCNNNNNNNGC	2 cut(s)	377, 1004
NciI	CCSGG	2 cut(s)	921, 922
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	3 cut(s)	87, 586, 1054
NlaIII	CATG	7 cut(s)	41, 73, 280, 691, 787, 874, 916
NlaIV	GGNNCC	2 cut(s)	32, 954
NmuCI	GTSAC	1 cut(s)	664
PagI	TCATGA	1 cut(s)	783
PctI	GAATGC	2 cut(s)	946, 1093
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	6 cut(s)	313, 382, 403, 682, 1009, 1105
PleI	GAGTC	1 cut(s)	976
PpsI	GAGTC	1 cut(s)	976
Psp6I	CCWGG	5 cut(s)	73, 346, 594, 1020, 1062
PspGI	CCWGG	5 cut(s)	73, 346, 594, 1020, 1062
PspN4I	GGNNCC	2 cut(s)	32, 954
PspPI	GGNCC	1 cut(s)	821
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	1054
PvuII	CAGCTG	2 cut(s)	208, 401
RsaI	GTAC	6 cut(s)	130, 290, 354, 593, 801, 954
RsaNI	GTAC	6 cut(s)	129, 289, 353, 592, 800, 953
SaqAI	TTAA	5 cut(s)	98, 306, 642, 1032, 1122
SatI	GCNGC	6 cut(s)	312, 381, 402, 681, 1008, 1104
Sau3AI	GATC	3 cut(s)	87, 586, 1054
Sau96I	GGNCC	1 cut(s)	821
ScaI	AGTACT	2 cut(s)	354, 801
SchI	GAGTC	1 cut(s)	976
ScrFI	CCNGG	7 cut(s)	75, 348, 596, 921, 922, 1022, 1064
SexAI	ACCWGGT	1 cut(s)	1062
SfcI	CTRYAG	2 cut(s)	112, 811
SmaI	CCCGGG	1 cut(s)	922
Sse9I	AATT	8 cut(s)	18, 99, 144, 428, 576, 732, 1029, 1044
SsiI	CCGC	2 cut(s)	371, 1104
SspMI	CTAG	4 cut(s)	405, 608, 758, 1113
StyD4I	CCNGG	7 cut(s)	73, 346, 594, 919, 920, 1020, 1062
TaaI	ACNGT	2 cut(s)	502, 812
TaqI	TCGA	2 cut(s)	703, 1151
TasI	AATT	8 cut(s)	18, 99, 144, 428, 576, 732, 1029, 1044
TatI	WGTACW	2 cut(s)	352, 799
TauI	GCSGC	1 cut(s)	1106
Tru1I	TTAA	5 cut(s)	98, 306, 642, 1032, 1122
Tru9I	TTAA	5 cut(s)	98, 306, 642, 1032, 1122
TscAI	CASTG	1 cut(s)	1008
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	5 cut(s)	311, 380, 401, 680, 1007
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	5 cut(s)	441, 584, 800, 849, 929
TspMI	CCCGGG	1 cut(s)	920
TspRI	CASTG	1 cut(s)	1008
XapI	RAATTY	1 cut(s)	428
XmaI	CCCGGG	1 cut(s)	920
XspI	CTAG	4 cut(s)	405, 608, 758, 1113
ZrmI	AGTACT	2 cut(s)	354, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.