Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Reverse (-)

50256476 .. 50280020

Gene Structure 23545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG371300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCTGTTGGGTATAACAATGTTGATGTCAATGCTGCTAACAAGTATGGAGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGCTGGCAGCTTCACTCTCAGTAACAGCTGCTAGGAGAATAGTGGAAGCAGATGAGTTTATGAGGGCTGGTTTATATGATGGATGGCTTCCCAATCTGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGGTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTGTACCAGGCTACACGACTAGAAAAGTTTGTTACAGCTTATGGTCAGTTCCTACAAGCCAATGGCGAAAGCCCTGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTGCGAGAAGCAGATGTGATAAGCCTTCACCCGATTCTTGATAAAACCACTTATCATCTGATCAACAAGGAAAGATTAGCAACAATGAAGAAGGAAGCAGTCCTTGTTAACTGTAGCAGAGGGCCCGTGGTTGATGAGGTTGCTCTTGTGGAGCATTTGAAACAAAATCCCATGTTTCGAGTTGGTCTTGATGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTTAATGTCCTGGGTAAAATCAAAGGATATCCAGTTTGGTCTGATGCGAACCGGGTAGAACCATTCCTGAATGAGAATGCTCCACCACCAGCTGCCAGTCCTAGCATTGTTAATGCCAAGGCCTTGGGATTACCAGTTTCAAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

294

Amino Acids

31.94

Weight (kDa)

6.92

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	1 - 256	7.5e-14	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	38 - 230	3.3e-45	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	680
AfaI	GTAC	3 cut(s)	78, 317, 678
AgsI	TTSAA	4 cut(s)	281, 289, 583, 876
AjnI	CCWGG	4 cut(s)	70, 318, 643, 744
AluBI	AGCT	7 cut(s)	100, 107, 125, 242, 350, 827, 880
AluI	AGCT	7 cut(s)	100, 107, 125, 242, 350, 827, 880
Ama87I	CYCGRG	1 cut(s)	708
AoxI	GGCC	2 cut(s)	545, 855
ApaI	GGGCCC	1 cut(s)	549
ApeKI	GCWGC	7 cut(s)	35, 104, 125, 404, 424, 731, 827
Asp718I	GGTACC	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	545, 546
AsuC2I	CCSGG	1 cut(s)	788
AsuHPI	GGTGA	1 cut(s)	443
AvaI	CYCGRG	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	549
BbvI	GCAGC	7 cut(s)	22, 112, 116, 411, 416, 718, 814
BccI	CCATC	4 cut(s)	170, 174, 268, 677
BciT130I	CCWGG	4 cut(s)	72, 320, 645, 746
BclI	TGATCA	1 cut(s)	483
BcnI	CCSGG	1 cut(s)	788
BfaI	CTAG	3 cut(s)	129, 332, 837
BfmI	CTRYAG	2 cut(s)	90, 535
BisI	GCNGC	7 cut(s)	36, 105, 126, 405, 425, 732, 828
BlsI	GCNGC	7 cut(s)	37, 106, 127, 406, 426, 733, 829
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	5 cut(s)	72, 320, 645, 746, 788
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	2 cut(s)	545, 546
BmiI	GGNNCC	2 cut(s)	547, 678
BmrFI	CCNGG	5 cut(s)	72, 320, 645, 746, 788
BmsI	GCATC	1 cut(s)	769
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	788
BsaJI	CCNNGG	5 cut(s)	549, 644, 745, 852, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bse1I	ACTGG	3 cut(s)	767, 831, 869
Bse3DI	GCAATG	1 cut(s)	684
BseBI	CCWGG	4 cut(s)	72, 320, 645, 746
BseDI	CCNNGG	5 cut(s)	549, 644, 745, 852, 858
BseGI	GGATG	3 cut(s)	185, 421, 631
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	3 cut(s)	767, 831, 869
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	7 cut(s)	22, 112, 116, 411, 416, 718, 814
BshFI	GGCC	2 cut(s)	547, 857
BshNI	GGYRCC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	1 cut(s)	787
BsmI	GAATGC	2 cut(s)	670, 817
BsnI	GGCC	2 cut(s)	547, 857
BsoBI	CYCGRG	1 cut(s)	708
Bsp120I	GGGCCC	1 cut(s)	545
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	310, 483
BspANI	GGCC	2 cut(s)	547, 857
BspCNI	CTCAG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	547, 678
BspT107I	GGYRCC	1 cut(s)	676
BsrDI	GCAATG	1 cut(s)	684
BsrI	ACTGG	3 cut(s)	767, 831, 869
BssECI	CCNNGG	5 cut(s)	549, 644, 745, 852, 858
BssMI	GATC	2 cut(s)	310, 483
BssT1I	CCWWGG	2 cut(s)	852, 858
Bst2UI	CCWGG	4 cut(s)	72, 320, 645, 746
Bst4CI	ACNGT	2 cut(s)	226, 536
BstC8I	GCNNGC	3 cut(s)	102, 409, 651
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	185, 421, 631
BstKTI	GATC	2 cut(s)	313, 486
BstMBI	GATC	2 cut(s)	310, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 217, 728
BstNI	CCWGG	4 cut(s)	72, 320, 645, 746
BstSCI	CCNGG	5 cut(s)	70, 318, 643, 744, 786
BstSFI	CTRYAG	2 cut(s)	90, 535
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	7 cut(s)	22, 112, 116, 411, 416, 718, 814
BstXI	CCANNNNNNTGG	2 cut(s)	274, 859
BsuRI	GGCC	2 cut(s)	547, 857
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	3 cut(s)	185, 421, 631
Cac8I	GCNNGC	3 cut(s)	102, 409, 651
Cfr13I	GGNCC	2 cut(s)	545, 546
Csp6I	GTAC	3 cut(s)	77, 316, 677
CviAII	CATG	3 cut(s)	412, 595, 637
CviQI	GTAC	3 cut(s)	77, 316, 677
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	2 cut(s)	312, 485
DpnII	GATC	2 cut(s)	310, 483
Eco130I	CCWWGG	2 cut(s)	852, 858
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	764
Eco57I	CTGAAG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	708
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	4 cut(s)	70, 318, 643, 744
EcoRV	GATATC	1 cut(s)	764
EcoT14I	CCWWGG	2 cut(s)	852, 858
EcoT38I	GRGCYC	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	852, 858
FaeI	CATG	3 cut(s)	415, 598, 640
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FatI	CATG	3 cut(s)	411, 594, 636
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	483
Fnu4HI	GCNGC	7 cut(s)	36, 105, 126, 405, 425, 732, 828
FokI	GGATG	3 cut(s)	192, 428, 638
FriOI	GRGCYC	1 cut(s)	549
Fsp4HI	GCNGC	7 cut(s)	36, 105, 126, 405, 425, 732, 828
FspBI	CTAG	3 cut(s)	129, 332, 837
GluI	GCNGC	7 cut(s)	36, 105, 126, 405, 425, 732, 828
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	547, 857
HapII	CCGG	1 cut(s)	787
Hin1II	CATG	3 cut(s)	415, 598, 640
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	2 cut(s)	457, 706
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	1 cut(s)	787
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	2 cut(s)	532, 705
Hpy188I	TCNGA	2 cut(s)	483, 778
Hpy188III	TCNNGA	5 cut(s)	289, 461, 611, 710, 802
Hpy8I	GTNNAC	2 cut(s)	532, 705
HpyAV	CCTTC	4 cut(s)	275, 458, 508, 707
HpyCH4III	ACNGT	2 cut(s)	226, 536
HpyCH4V	TGCA	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 217, 728
HpyF3I	CTNAG	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	415, 598, 640
KpnI	GGTACC	1 cut(s)	680
Ksp22I	TGATCA	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	2 cut(s)	310, 483
LmnI	GCTCC	3 cut(s)	239, 574, 820
Lsp1109I	GCAGC	7 cut(s)	22, 112, 116, 411, 416, 718, 814
LweI	GCATC	1 cut(s)	769
MaeI	CTAG	3 cut(s)	129, 332, 837
MaeIII	GTNAC	3 cut(s)	118, 343, 388
MalI	GATC	2 cut(s)	312, 485
MboI	GATC	2 cut(s)	310, 483
MboII	GAAGA	2 cut(s)	523, 673
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	153, 412, 536, 553, 616, 690
MseI	TTAA	3 cut(s)	531, 738, 846
MspA1I	CMGCKG	2 cut(s)	125, 827
MspI	CCGG	1 cut(s)	787
MspR9I	CCNGG	5 cut(s)	72, 320, 645, 746, 788
Mva1269I	GAATGC	2 cut(s)	670, 817
MvaI	CCWGG	4 cut(s)	72, 320, 645, 746
MwoI	GCNNNNNNNGC	3 cut(s)	101, 217, 728
NciI	CCSGG	1 cut(s)	788
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	2 cut(s)	310, 483
NlaIII	CATG	3 cut(s)	415, 598, 640
NlaIV	GGNNCC	2 cut(s)	547, 678
NmuCI	GTSAC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	708
PceI	AGGCCT	1 cut(s)	857
PctI	GAATGC	2 cut(s)	670, 817
PfeI	GAWTC	1 cut(s)	457
PfoI	TCCNGGA	1 cut(s)	70
PkrI	GCNGC	7 cut(s)	37, 106, 127, 406, 426, 733, 829
PleI	GAGTC	1 cut(s)	700
PpsI	GAGTC	1 cut(s)	700
Psp6I	CCWGG	4 cut(s)	70, 318, 643, 744
PspGI	CCWGG	4 cut(s)	70, 318, 643, 744
PspN4I	GGNNCC	2 cut(s)	547, 678
PspOMI	GGGCCC	1 cut(s)	545
PspPI	GGNCC	2 cut(s)	545, 546
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PvuII	CAGCTG	2 cut(s)	125, 827
RsaI	GTAC	3 cut(s)	78, 317, 678
RsaNI	GTAC	3 cut(s)	77, 316, 677
SaqAI	TTAA	3 cut(s)	531, 738, 846
SatI	GCNGC	7 cut(s)	36, 105, 126, 405, 425, 732, 828
Sau3AI	GATC	2 cut(s)	310, 483
Sau96I	GGNCC	2 cut(s)	545, 546
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	5 cut(s)	72, 320, 645, 746, 788
SduI	GDGCHC	1 cut(s)	549
SfaNI	GCATC	1 cut(s)	769
SfcI	CTRYAG	2 cut(s)	90, 535
Sfr274I	CTCGAG	1 cut(s)	708
SlaI	CTCGAG	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
Sse9I	AATT	1 cut(s)	300
SseBI	AGGCCT	1 cut(s)	857
SspMI	CTAG	3 cut(s)	129, 332, 837
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	5 cut(s)	70, 318, 643, 744, 786
StyI	CCWWGG	2 cut(s)	852, 858
TaaI	ACNGT	2 cut(s)	226, 536
TaqI	TCGA	2 cut(s)	601, 709
TasI	AATT	1 cut(s)	300
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	531, 738, 846
Tru9I	TTAA	3 cut(s)	531, 738, 846
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	7 cut(s)	35, 104, 125, 404, 424, 731, 827
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	308, 524, 653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	708
XspI	CTAG	3 cut(s)	129, 332, 837
ZrmI	AGTACT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.