Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Reverse (-)

20552378 .. 20552822

Gene Structure 445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0225400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAACCCGACCCAATATACGTACACGACGTCAATGACTCCGTCAGACGTCGTGCCATTACGCACATAATAAAGGGCAGAATTGGTTTTTTACCACACGAACAAGAAGGTCCTGGAGGATCTGCAAAAATCCCGTCGAAGCGCCTCTGCAACAAGATCGCCGGATTCTCGACCCATCTCATGAAGCGCATCCAGAAGGGCCCCGTCCGCGGCATCTCCCTCAAGCTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCCGACGAGTCCGCCATGAAGACCGACGAGATCGCCGTCGACAAGGAGACCGTCGATCAAGAAGGTGGATCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

113

Amino Acids

12.72

Weight (kDa)

8.79

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S17e	PF00833	42 - 107	2.3e-29	Ribosomal S17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	33, 52
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	2 cut(s)	210, 243
AciI	CCGC	4 cut(s)	208, 210, 250, 276
AclWI	GGATC	3 cut(s)	127, 327, 340
AcyI	GRCGYC	2 cut(s)	30, 49
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	209, 235
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	1 cut(s)	226
AluI	AGCT	1 cut(s)	226
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	3 cut(s)	127, 327, 340
AoxI	GGCC	1 cut(s)	199
ApaI	GGGCCC	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	4 cut(s)	144, 189, 243, 249
AspS9I	GGNCC	3 cut(s)	110, 199, 200
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	290
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	284
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	305
BfoI	RGCGCY	2 cut(s)	145, 250
BisI	GCNGC	2 cut(s)	211, 250
BlsI	GCNGC	2 cut(s)	212, 251
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	110, 199, 200
BmiI	GGNNCC	3 cut(s)	201, 202, 334
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	198, 222
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	22
BsaHI	GRCGYC	2 cut(s)	30, 49
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 235
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	209, 235
BseRI	GAGGAG	2 cut(s)	248, 251
BseSI	GKGCMC	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	210, 243
BshFI	GGCC	1 cut(s)	201
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	2 cut(s)	209, 235
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	305
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	119, 156, 294, 319, 332
BspACI	CCGC	4 cut(s)	208, 210, 250, 276
BspANI	GGCC	1 cut(s)	201
BspFNI	CGCG	2 cut(s)	210, 243
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	201, 202, 334
BspPI	GGATC	3 cut(s)	127, 327, 340
BspTNI	GGTCTC	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	5 cut(s)	119, 156, 294, 319, 332
BssNI	GRCGYC	2 cut(s)	30, 49
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	2 cut(s)	30, 49
BstBAI	YACGTR	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	245
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	210, 243
BstH2I	RGCGCY	2 cut(s)	145, 250
BstHHI	GCGC	4 cut(s)	144, 189, 243, 249
BstKTI	GATC	5 cut(s)	122, 159, 297, 322, 335
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	5 cut(s)	119, 156, 294, 319, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 249
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	203
BstSNI	TACGTA	1 cut(s)	22
BstUI	CGCG	2 cut(s)	210, 243
BstV2I	GAAGAC	1 cut(s)	290
BstX2I	RGATCY	2 cut(s)	119, 332
BstYI	RGATCY	2 cut(s)	119, 332
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	245
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	4 cut(s)	144, 189, 243, 249
Cfr13I	GGNCC	3 cut(s)	110, 199, 200
Cfr42I	CCGCGG	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	3 cut(s)	181, 253, 280
CviJI	RGCY	2 cut(s)	201, 226
CviKI_1	RGCY	2 cut(s)	201, 226
CviQI	GTAC	1 cut(s)	23
DpnI	GATC	5 cut(s)	121, 158, 296, 321, 334
DpnII	GATC	5 cut(s)	119, 156, 294, 319, 332
EciI	GGCGGA	1 cut(s)	265
Eco105I	TACGTA	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	110
EcoO109I	RGGNCCY	3 cut(s)	110, 199, 200
EcoRII	CCWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	3 cut(s)	184, 256, 283
FaiI	YATR	5 cut(s)	19, 68, 182, 254, 281
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	180, 252, 279
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	211, 250
FokI	GGATG	1 cut(s)	176
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	211, 250
GlaI	GCGC	4 cut(s)	143, 188, 242, 248
GluI	GCNGC	2 cut(s)	211, 250
GsuI	CTGGAG	1 cut(s)	135
HaeII	RGCGCY	2 cut(s)	145, 250
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	4 cut(s)	144, 189, 243, 249
Hin1I	GRCGYC	2 cut(s)	30, 49
Hin1II	CATG	3 cut(s)	184, 256, 283
Hin6I	GCGC	4 cut(s)	142, 187, 241, 247
HinP1I	GCGC	4 cut(s)	142, 187, 241, 247
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	3 cut(s)	38, 165, 272
HpaII	CCGG	1 cut(s)	162
Hpy166II	GTNNAC	2 cut(s)	25, 304
Hpy188I	TCNGA	2 cut(s)	47, 341
Hpy188III	TCNNGA	4 cut(s)	169, 181, 193, 323
Hpy8I	GTNNAC	2 cut(s)	25, 304
Hpy99I	CGWCG	7 cut(s)	32, 54, 139, 272, 293, 305, 320
HpyAV	CCTTC	3 cut(s)	101, 190, 320
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	3 cut(s)	21, 30, 49
HpyCH4V	TGCA	2 cut(s)	125, 150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 249
HpySE526I	ACGT	3 cut(s)	21, 30, 49
Hsp92I	GRCGYC	2 cut(s)	30, 49
Hsp92II	CATG	3 cut(s)	184, 256, 283
HspAI	GCGC	4 cut(s)	142, 187, 241, 247
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	5 cut(s)	119, 156, 294, 319, 332
LmnI	GCTCC	2 cut(s)	231, 238
LpnPI	CCDG	4 cut(s)	99, 126, 175, 206
LweI	GCATC	2 cut(s)	198, 222
MaeII	ACGT	3 cut(s)	21, 30, 49
MalI	GATC	5 cut(s)	121, 158, 296, 321, 334
MboI	GATC	5 cut(s)	119, 156, 294, 319, 332
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	2 cut(s)	119, 332
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	2 cut(s)	32, 281
MnlI	CCTC	5 cut(s)	110, 155, 226, 229, 230
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	210, 243
MwoI	GCNNNNNNNGC	2 cut(s)	207, 249
NdeII	GATC	5 cut(s)	119, 156, 294, 319, 332
NlaIII	CATG	3 cut(s)	184, 256, 283
NlaIV	GGNNCC	3 cut(s)	201, 202, 334
PagI	TCATGA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 297
PfeI	GAWTC	1 cut(s)	165
PflFI	GACNNNGTC	2 cut(s)	41, 260
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	212, 251
PleI	GAGTC	2 cut(s)	32, 280
PpsI	GAGTC	2 cut(s)	32, 280
Ppu21I	YACGTR	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	3 cut(s)	201, 202, 334
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	3 cut(s)	110, 199, 200
PspPPI	RGGWCCY	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	119, 332
PsyI	GACNNNGTC	2 cut(s)	41, 260
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	302
SatI	GCNGC	2 cut(s)	211, 250
Sau3AI	GATC	5 cut(s)	119, 156, 294, 319, 332
Sau96I	GGNCC	3 cut(s)	110, 199, 200
SchI	GAGTC	2 cut(s)	32, 281
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	6 cut(s)	24, 33, 52, 112, 228, 331
SfaNI	GCATC	2 cut(s)	198, 222
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
SnaBI	TACGTA	1 cut(s)	22
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	4 cut(s)	208, 210, 250, 276
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	3 cut(s)	24, 33, 52
TaqI	TCGA	4 cut(s)	137, 170, 303, 318
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	81
TauI	GCSGC	2 cut(s)	213, 252
TfiI	GAWTC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	17, 197, 296
TspGWI	ACGGA	1 cut(s)	31
Tth111I	GACNNNGTC	2 cut(s)	41, 260
VpaK11BI	GGWCC	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	303
ZraI	GACGTC	2 cut(s)	31, 50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.