AT1G68010

Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
25493193 .. 25496053
2861 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68010.1

Sequence Viewer

Length: 1161 bp
ATGGCGAAACCGGTGTCCATTGAAGTGTATAATCCTAATGGGAAATACAGAGTTGTTAGCACAAAACCGATGCCTGGAACTCGCTGGATCAATCTCTTGGTAGACCAAGGTTGTCGCGTTGAGATATGTCATTTGAAGAAGACAATCTTGTCTGTAGAAGATATCATTGATCTGATCGGAGACAAGTGTGATGGAGTCATCGGTCAGTTGACGGAAGATTGGGGAGAGACTCTGTTCTCAGCTTTGAGCAAAGCTGGAGGGAAAGCTTTCAGTAACATGGCCGTTGGTTATAACAACGTTGATGTTGAAGCTGCCAATAAGTATGGAATTGCTGTCGGTAACACTCCGGGAGTGTTGACTGAGACGACGGCTGAACTAGCTGCTTCTCTTTCCTTGGCTGCTGCAAGAAGAATTGTTGAAGCCGACGAATTCATGAGAGGTGGCTTGTACGAGGGATGGCTTCCTCATCTGTTTGTGGGGAACTTACTTAAAGGACAGACTGTTGGAGTTATTGGAGCTGGACGTATTGGATCTGCTTATGCTAGAATGATGGTGGAAGGGTTCAAGATGAATTTGATCTACTTTGATCTTTACCAATCCACTCGTCTTGAGAAATTTGTGACAGCTTATGGACAGTTCTTGAAAGCAAATGGAGAACAACCTGTGACATGGAAACGAGCTTCGTCCATGGAGGAGGTGCTGCGTGAGGCTGATCTGATAAGTCTTCACCCGGTGCTGGACAAAACCACTTACCATCTTGTCAACAAGGAGAGGCTTGCCATGATGAAAAAGGAAGCAATCCTTGTGAACTGCAGCAGAGGTCCTGTGATCGATGAGGCAGCTTTGGTCGAACATCTCAAAGAGAACCCGATGTTCCGAGTTGGTCTCGATGTGTTCGAGGAAGAGCCATTCATGAAACCAGGGCTTGCTGATACGAAAAACGCTATTGTTGTTCCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGAATGGCTACGCTTGCAGCTCTCAACGTCCTCGGAAGAGTCAAAGGGTACCCGATTTGGCATGACCCGAACCGAGTCGATCCATTCTTGAACGAAAACGCTTCACCGCCCAATGCCAGTCCAAGCATCGTCAACTCAAAGGCCTTAGGATTGCCTGTTTCGAAGCTATGA

Protein Analysis

386

Amino Acids

42.25

Weight (kDa)

6.68

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2-Hacid_dh PF00389 30 - 346 6.9e-18 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C PF02826 130 - 322 1.3e-44 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AasI GACNNNNNNGTC 1 cut(s) 148
Acc65I GGTACC 1 cut(s) 1038
AccB1I GGYRCC 1 cut(s) 1038
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 1097
AclI AACGTT 1 cut(s) 297
AclWI GGATC 3 cut(s) 95, 538, 1064
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 3 cut(s) 428, 571, 614
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 2 cut(s) 449, 1040
AfiI CCNNNNNNNGG 2 cut(s) 74, 736
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 23, 136, 308, 419, 565, 643, 1081
AjnI CCWGG 2 cut(s) 73, 919
Alw26I GTCTC 4 cut(s) 174, 221, 356, 890
AlwI GGATC 3 cut(s) 95, 538, 1064
AoxI GGCC 2 cut(s) 279, 1131
ApeKI GCWGC 8 cut(s) 311, 380, 398, 401, 700, 813, 839, 1007
ApoI RAATTY 3 cut(s) 428, 571, 614
ArsI GACNNNNNNTTYG 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 10
Asp700I GAANNNNTTC 1 cut(s) 266
Asp718I GGTACC 1 cut(s) 1038
AspS9I GGNCC 1 cut(s) 821
AsuC2I CCSGG 2 cut(s) 348, 731
AsuHPI GGTGA 2 cut(s) 719, 1086
AsuII TTCGAA 1 cut(s) 1151
AvaII GGWCC 1 cut(s) 821
AxyI CCTNAGG 1 cut(s) 1135
BanI GGYRCC 1 cut(s) 1038
BauI CACGAG 1 cut(s) 984
BbsI GAAGAC 2 cut(s) 146, 716
BbvI GCAGC 8 cut(s) 298, 367, 385, 388, 687, 825, 851, 1019
BccI CCATC 4 cut(s) 185, 450, 544, 762
BceAI ACGGC 2 cut(s) 266, 384
BciT130I CCWGG 2 cut(s) 75, 921
BcnI CCSGG 2 cut(s) 348, 731
BcoDI GTCTC 4 cut(s) 174, 221, 356, 890
BfaI CTAG 2 cut(s) 377, 543
BfmI CTRYAG 2 cut(s) 153, 811
BisI GCNGC 8 cut(s) 312, 381, 399, 402, 701, 814, 840, 1008
BlsI GCNGC 8 cut(s) 313, 382, 400, 403, 702, 815, 841, 1009
Bme1390I CCNGG 4 cut(s) 75, 348, 731, 921
Bme18I GGWCC 1 cut(s) 821
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 1 cut(s) 1040
BmrFI CCNGG 4 cut(s) 75, 348, 731, 921
BmsI GCATC 2 cut(s) 60, 1125
BpiI GAAGAC 2 cut(s) 146, 716
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 1151
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 2 cut(s) 348, 731
Bsa29I ATCGAT 1 cut(s) 831
BsaI GGTCTC 1 cut(s) 890
BsaJI CCNNGG 5 cut(s) 106, 393, 687, 920, 1021
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 736
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 1107
Bse21I CCTNAGG 1 cut(s) 1135
Bse3DI GCAATG 1 cut(s) 960
BseBI CCWGG 2 cut(s) 75, 921
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 5 cut(s) 106, 393, 687, 920, 1021
BseGI GGATG 1 cut(s) 461
BseLI CCNNNNNNNGG 2 cut(s) 74, 736
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 2 cut(s) 252, 351
BseNI ACTGG 1 cut(s) 1107
BseRI GAGGAG 1 cut(s) 707
BseXI GCAGC 8 cut(s) 298, 367, 385, 388, 687, 825, 851, 1019
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 281, 1133
BshNI GGYRCC 1 cut(s) 1038
BshTI ACCGGT 1 cut(s) 10
BshVI ATCGAT 1 cut(s) 831
BsiSI CCGG 3 cut(s) 11, 347, 731
BslI CCNNNNNNNGG 2 cut(s) 74, 736
BsmAI GTCTC 4 cut(s) 174, 221, 356, 890
BsmBI CGTCTC 1 cut(s) 356
BsnI GGCC 2 cut(s) 281, 1133
Bso31I GGTCTC 1 cut(s) 890
Bsp119I TTCGAA 1 cut(s) 1151
Bsp143I GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 1 cut(s) 1097
BspANI GGCC 2 cut(s) 281, 1133
BspCNI CTCAG 2 cut(s) 251, 352
BspDI ATCGAT 1 cut(s) 831
BspFNI CGCG 1 cut(s) 117
BspHI TCATGA 2 cut(s) 432, 912
BspLI GGNNCC 1 cut(s) 1040
BspMAI CTGCAG 1 cut(s) 815
BspPI GGATC 3 cut(s) 95, 538, 1064
BspQI GCTCTTC 1 cut(s) 897
BspT104I TTCGAA 1 cut(s) 1151
BspT107I GGYRCC 1 cut(s) 1038
BspTNI GGTCTC 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 960
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 5 cut(s) 106, 393, 687, 920, 1021
BssMI GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
BssSI CACGAG 1 cut(s) 984
BssT1I CCWWGG 3 cut(s) 106, 393, 687
Bst2BI CACGAG 1 cut(s) 984
Bst2UI CCWGG 2 cut(s) 75, 921
Bst4CI ACNGT 2 cut(s) 502, 636
Bst6I CTCTTC 2 cut(s) 897, 1021
BstBI TTCGAA 1 cut(s) 1151
BstC8I GCNNGC 3 cut(s) 777, 927, 1005
BstDEI CTNAG 3 cut(s) 238, 360, 1135
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 1 cut(s) 461
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 9 cut(s) 90, 172, 177, 533, 579, 589, 715, 831, 1072
BstMAI GTCTC 4 cut(s) 174, 221, 356, 890
BstMBI GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 377, 1004
BstNI CCWGG 2 cut(s) 75, 921
BstSCI CCNGG 4 cut(s) 73, 346, 729, 919
BstSFI CTRYAG 2 cut(s) 153, 811
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 8 cut(s) 298, 367, 385, 388, 687, 825, 851, 1019
BstV2I GAAGAC 2 cut(s) 146, 716
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
Bsu15I ATCGAT 1 cut(s) 831
Bsu36I CCTNAGG 1 cut(s) 1135
BsuRI GGCC 2 cut(s) 281, 1133
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 1 cut(s) 461
Cac8I GCNNGC 3 cut(s) 777, 927, 1005
CciI TCATGA 2 cut(s) 432, 912
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 821
ClaI ATCGAT 1 cut(s) 831
Csp6I GTAC 2 cut(s) 448, 1039
CspAI ACCGGT 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 589, 624
CviAII CATG 7 cut(s) 277, 433, 669, 688, 781, 913, 1052
CviQI GTAC 2 cut(s) 448, 1039
DdeI CTNAG 3 cut(s) 238, 360, 1135
DpnI GATC 9 cut(s) 89, 171, 176, 532, 578, 588, 714, 830, 1071
DpnII GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
DraIII CACNNNGTG 1 cut(s) 733
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 897, 1021
EarI CTCTTC 2 cut(s) 897, 1021
Eco130I CCWWGG 3 cut(s) 106, 393, 687
Eco147I AGGCCT 1 cut(s) 1133
Eco31I GGTCTC 1 cut(s) 890
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 821
Eco81I CCTNAGG 1 cut(s) 1135
EcoO109I RGGNCCY 1 cut(s) 821
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 73, 919
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 3 cut(s) 106, 393, 687
ErhI CCWWGG 3 cut(s) 106, 393, 687
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 7 cut(s) 280, 436, 672, 691, 784, 916, 1055
FalI AAGNNNNNCTT 4 cut(s) 131, 163, 786, 818
FatI CATG 7 cut(s) 276, 432, 668, 687, 780, 912, 1051
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 8 cut(s) 312, 381, 399, 402, 701, 814, 840, 1008
FokI GGATG 1 cut(s) 468
Fsp4HI GCNGC 8 cut(s) 312, 381, 399, 402, 701, 814, 840, 1008
FspBI CTAG 2 cut(s) 377, 543
GluI GCNGC 8 cut(s) 312, 381, 399, 402, 701, 814, 840, 1008
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 281, 1133
HapII CCGG 3 cut(s) 11, 347, 731
Hin1II CATG 7 cut(s) 280, 436, 672, 691, 784, 916, 1055
HincII GTYRAC 4 cut(s) 210, 357, 763, 1123
HindII GTYRAC 4 cut(s) 210, 357, 763, 1123
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 5 cut(s) 195, 229, 982, 1029, 1065
HpaII CCGG 3 cut(s) 11, 347, 731
HphI GGTGA 2 cut(s) 719, 1086
Hpy166II GTNNAC 7 cut(s) 103, 210, 357, 763, 808, 981, 1123
Hpy188I TCNGA 5 cut(s) 174, 179, 717, 878, 1025
Hpy188III TCNNGA 8 cut(s) 433, 565, 608, 640, 887, 913, 986, 1078
Hpy8I GTNNAC 7 cut(s) 103, 210, 357, 763, 808, 981, 1123
Hpy99I CGWCG 2 cut(s) 370, 428
HpyAV CCTTC 2 cut(s) 551, 983
HpyCH4III ACNGT 2 cut(s) 502, 636
HpyCH4IV ACGT 3 cut(s) 297, 523, 1017
HpyCH4V TGCA 3 cut(s) 404, 813, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 1004
HpyF3I CTNAG 3 cut(s) 238, 360, 1135
HpySE526I ACGT 3 cut(s) 297, 523, 1017
Hsp92II CATG 7 cut(s) 280, 436, 672, 691, 784, 916, 1055
KpnI GGTACC 1 cut(s) 1042
Kzo9I GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 8 cut(s) 298, 367, 385, 388, 687, 825, 851, 1019
LweI GCATC 2 cut(s) 60, 1125
MaeI CTAG 2 cut(s) 377, 543
MaeII ACGT 3 cut(s) 297, 523, 1017
MaeIII GTNAC 4 cut(s) 272, 338, 619, 664
MalI GATC 9 cut(s) 89, 171, 176, 532, 578, 588, 714, 830, 1071
MboI GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
MboII GAAGA 8 cut(s) 148, 151, 170, 227, 420, 716, 914, 1038
MflI RGATCY 1 cut(s) 530
MluCI AATT 5 cut(s) 327, 411, 428, 571, 614
MlyI GAGTC 5 cut(s) 204, 223, 976, 1038, 1074
MmeI TCCRAC 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 23
MspI CCGG 3 cut(s) 11, 347, 731
MspR9I CCNGG 4 cut(s) 75, 348, 731, 921
MvaI CCWGG 2 cut(s) 75, 921
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 377, 1004
NciI CCSGG 2 cut(s) 348, 731
NcoI CCATGG 1 cut(s) 687
NdeII GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
NlaIII CATG 7 cut(s) 280, 436, 672, 691, 784, 916, 1055
NlaIV GGNNCC 1 cut(s) 1040
NmuCI GTSAC 2 cut(s) 619, 664
NspV TTCGAA 1 cut(s) 1151
PagI TCATGA 2 cut(s) 432, 912
PceI AGGCCT 1 cut(s) 1133
PciSI GCTCTTC 1 cut(s) 897
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PdmI GAANNNNTTC 1 cut(s) 266
PfoI TCCNGGA 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 8 cut(s) 313, 382, 400, 403, 702, 815, 841, 1009
PleI GAGTC 5 cut(s) 203, 223, 976, 1037, 1073
PpsI GAGTC 5 cut(s) 203, 223, 976, 1037, 1073
PpuMI RGGWCCY 1 cut(s) 821
PsiI TTATAA 1 cut(s) 291
Psp1406I AACGTT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 821
Psp6I CCWGG 2 cut(s) 73, 919
PspGI CCWGG 2 cut(s) 73, 919
PspN4I GGNNCC 1 cut(s) 1040
PspPI GGNCC 1 cut(s) 821
PspPPI RGGWCCY 1 cut(s) 821
PstI CTGCAG 1 cut(s) 815
PsuI RGATCY 1 cut(s) 530
RsaI GTAC 2 cut(s) 449, 1040
RsaNI GTAC 2 cut(s) 448, 1039
RseI CAYNNNNRTG 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 8 cut(s) 312, 381, 399, 402, 701, 814, 840, 1008
Sau3AI GATC 9 cut(s) 87, 169, 174, 530, 576, 586, 712, 828, 1069
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 5 cut(s) 204, 223, 976, 1038, 1074
ScrFI CCNGG 4 cut(s) 75, 348, 731, 921
SfaNI GCATC 2 cut(s) 60, 1125
SfcI CTRYAG 2 cut(s) 153, 811
SfuI TTCGAA 1 cut(s) 1151
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 5 cut(s) 327, 411, 428, 571, 614
SseBI AGGCCT 1 cut(s) 1133
SsiI CCGC 1 cut(s) 1097
SspMI CTAG 2 cut(s) 377, 543
StuI AGGCCT 1 cut(s) 1133
StyD4I CCNGG 4 cut(s) 73, 346, 729, 919
StyI CCWWGG 3 cut(s) 106, 393, 687
TaaI ACNGT 2 cut(s) 502, 636
TaiI ACGT 3 cut(s) 300, 526, 1020
TaqI TCGA 6 cut(s) 831, 849, 888, 897, 1068, 1151
TaqII GACCGA 1 cut(s) 191
TasI AATT 5 cut(s) 327, 411, 428, 571, 614
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 619, 664
TseI GCWGC 8 cut(s) 311, 380, 398, 401, 700, 813, 839, 1007
Tsp45I GTSAC 2 cut(s) 619, 664
TspDTI ATGAA 5 cut(s) 421, 584, 800, 901, 929
TspGWI ACGGA 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 821
XapI RAATTY 3 cut(s) 428, 571, 614
XmiI GTMKAC 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 2 cut(s) 377, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.