Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Reverse (-)

38206922 .. 38231306

Gene Structure 24385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG361200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGTCCCACTATTTCCTGTTCCAGCTTATGGTCAGCTCCTACAAGCCAATGGCGAAAGCCCTGTGACTTGGAAAAGAGCAGCAAACATGGATGAGGTGCTCCGAGAAGCAGATGTGGATGAGCCTTACATGAAACCTGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCCTCCAAGCAAACACCTGCAAAAGATGGTAATGAACAAGGTAGTGCTTGGATTTTTGTCCTATCCCAAAATCACTCATCAAGGACACCAGGTAGGTTGATAGTGGCTTCCAGGATTACCAGTTTAAAGGCTTTGAGCATTGATGTAAATGGCCACATTTTGAGCCTTCCTGGTGCATGGAGCAATTGTTATGCATGGAAACCAGGCTCTAGCGATACTGTGATTATCTGGAGTTCTAACAAAAGTTGTATATTTGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

7.78

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	1 cut(s)	229
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	461
AjnI	CCWGG	5 cut(s)	154, 292, 314, 373, 406
AluBI	AGCT	2 cut(s)	26, 37
AluI	AGCT	2 cut(s)	26, 37
Alw21I	GWGCWC	1 cut(s)	102
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	80
Asp718I	GGTACC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	2 cut(s)	188, 224
BciT130I	CCWGG	5 cut(s)	156, 294, 316, 375, 408
BfaI	CTAG	1 cut(s)	414
BfuAI	ACCTGC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	5 cut(s)	156, 294, 316, 375, 408
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 189
BmrFI	CCNGG	5 cut(s)	156, 294, 316, 375, 408
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	324
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	5 cut(s)	156, 294, 316, 375, 408
BseDI	CCNNGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	97, 124
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	92
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	102
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	6, 189
BspMI	ACCTGC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	155
Bst2UI	CCWGG	5 cut(s)	156, 294, 316, 375, 408
Bst4CI	ACNGT	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	97, 124
BstNI	CCWGG	5 cut(s)	156, 294, 316, 375, 408
BstSCI	CCNGG	5 cut(s)	154, 292, 314, 373, 406
BstV1I	GCAGC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	97, 124
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	4
CsiI	ACCWGGT	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	5 cut(s)	88, 130, 148, 381, 399
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	138
DraI	TTTAAA	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	191
EcoRII	CCWGG	5 cut(s)	154, 292, 314, 373, 406
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	5 cut(s)	91, 133, 151, 384, 402
FaiI	YATR	8 cut(s)	30, 89, 131, 149, 382, 396, 400, 455
FatI	CATG	5 cut(s)	87, 129, 147, 380, 398
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	2 cut(s)	104, 131
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	414
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	91, 133, 151, 384, 402
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	224, 380, 398
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	91, 133, 151, 384, 402
KpnI	GGTACC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	42, 105, 384
Lsp1109I	GCAGC	1 cut(s)	92
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	184
MfeI	CAATTG	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	102
MlsI	TGGCCA	1 cut(s)	357
MluCI	AATT	1 cut(s)	388
MluNI	TGGCCA	1 cut(s)	357
MnlI	CCTC	3 cut(s)	88, 201, 217
Mox20I	TGGCCA	1 cut(s)	357
Mph1103I	ATGCAT	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	357
MseI	TTAA	1 cut(s)	329
Msp20I	TGGCCA	1 cut(s)	357
MspR9I	CCNGG	5 cut(s)	156, 294, 316, 375, 408
MunI	CAATTG	1 cut(s)	388
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	5 cut(s)	156, 294, 316, 375, 408
NlaIII	CATG	5 cut(s)	91, 133, 151, 384, 402
NlaIV	GGNNCC	2 cut(s)	6, 189
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	229
PctI	GAATGC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	82
Psp6I	CCWGG	5 cut(s)	154, 292, 314, 373, 406
PspGI	CCWGG	5 cut(s)	154, 292, 314, 373, 406
PspN4I	GGNNCC	2 cut(s)	6, 189
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	5 cut(s)	156, 294, 316, 375, 408
SduI	GDGCHC	1 cut(s)	102
SexAI	ACCWGGT	1 cut(s)	292
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	414
StyD4I	CCNGG	5 cut(s)	154, 292, 314, 373, 406
TaaI	ACNGT	1 cut(s)	424
TasI	AATT	1 cut(s)	388
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	146, 164, 252
Van91I	CCANNNNNTGG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	4
XspI	CTAG	1 cut(s)	414
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.