Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000144.1

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

86808 .. 87614

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000144.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtttcgagttggtcttgacgtctttgaggatgagccttacatgaaacctgggcttaccgacctgaagaatgccatcgtggtacctcacattgcttctgcttccaagtggactcgagaaggaatggcaacattggctgctctcaatgtcctgggtaaaatcaaaggatatccagtttggtctgatgcgaaccgggtagaaccactcctgaatgagaatgctccaccaccagctgccagtcctagcattgttaataacgccaaggccttaggtaataatatctataaaactatcaatgacacgcacagaggtcgattttctttgctgaaaactctgtctcactgcaggattaccagtttcaaagctttgagcattgatgtaaatggccacattctgagccttcctggtgcaaatggagcaattgttatgcatggaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

146

Amino Acids

15.76

Weight (kDa)

9.37

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
Acc65I	GGTACC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	3 cut(s)	49, 150, 403
AluBI	AGCT	2 cut(s)	233, 365
AluI	AGCT	2 cut(s)	233, 365
Alw26I	GTCTC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	2 cut(s)	264, 385
ApeKI	GCWGC	2 cut(s)	137, 233
Asp718I	GGTACC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	268
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	124, 220
BccI	CCATC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	3 cut(s)	51, 152, 405
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	2 cut(s)	243, 439
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	138, 234
BlsI	GCNGC	2 cut(s)	139, 235
Bme1390I	CCNGG	4 cut(s)	51, 152, 194, 405
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	4 cut(s)	51, 152, 194, 405
BmsI	GCATC	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	50, 151, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	408, 438
Bse1I	ACTGG	3 cut(s)	173, 237, 354
Bse21I	CCTNAGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	3 cut(s)	51, 152, 405
BseDI	CCNNGG	3 cut(s)	50, 151, 261
BseGI	GGATG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	3 cut(s)	173, 237, 354
BseXI	GCAGC	2 cut(s)	124, 220
BshFI	GGCC	2 cut(s)	266, 387
BshNI	GGYRCC	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	342
BsmI	GAATGC	2 cut(s)	76, 223
BsnI	GGCC	2 cut(s)	266, 387
BsoBI	CYCGRG	1 cut(s)	114
BspANI	GGCC	2 cut(s)	266, 387
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	173, 237, 354
BssECI	CCNNGG	3 cut(s)	50, 151, 261
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	3 cut(s)	51, 152, 405
BstACI	GRCGYC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	268, 395
BstF5I	GGATG	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 416
BstNI	CCWGG	3 cut(s)	51, 152, 405
BstSCI	CCNGG	4 cut(s)	49, 150, 192, 403
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	124, 220
Bsu36I	CCTNAGG	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	266, 387
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	2 cut(s)	43, 431
CviJI	RGCY	8 cut(s)	37, 55, 137, 233, 266, 365, 387, 399
CviKI_1	RGCY	8 cut(s)	37, 55, 137, 233, 266, 365, 387, 399
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	268, 395
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	49, 150, 403
EcoRV	GATATC	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	261
EcoT22I	ATGCAT	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	46, 434
FaiI	YATR	4 cut(s)	44, 285, 428, 432
FatI	CATG	2 cut(s)	42, 430
Fnu4HI	GCNGC	2 cut(s)	138, 234
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	138, 234
FspBI	CTAG	2 cut(s)	243, 439
GluI	GCNGC	2 cut(s)	138, 234
HaeIII	GGCC	2 cut(s)	266, 387
HapII	CCGG	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	46, 434
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	2 cut(s)	184, 396
Hpy188III	TCNNGA	3 cut(s)	17, 116, 208
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	113, 410
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	345, 410, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 416
HpyF3I	CTNAG	2 cut(s)	268, 395
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	46, 434
KpnI	GGTACC	1 cut(s)	86
LmnI	GCTCC	2 cut(s)	226, 416
Lsp1109I	GCAGC	2 cut(s)	124, 220
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	2 cut(s)	243, 439
MaeII	ACGT	1 cut(s)	21
MboII	GAAGA	1 cut(s)	79
MfeI	CAATTG	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	1 cut(s)	420
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	22, 96, 302
Mox20I	TGGCCA	1 cut(s)	387
Mph1103I	ATGCAT	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	4 cut(s)	51, 152, 194, 405
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	2 cut(s)	76, 223
MvaI	CCWGG	3 cut(s)	51, 152, 405
MwoI	GCNNNNNNNGC	2 cut(s)	134, 416
NciI	CCSGG	1 cut(s)	194
NlaIII	CATG	2 cut(s)	46, 434
NlaIV	GGNNCC	1 cut(s)	84
NsiI	ATGCAT	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	266
PctI	GAATGC	2 cut(s)	76, 223
PkrI	GCNGC	2 cut(s)	139, 235
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	3 cut(s)	49, 150, 403
PspGI	CCWGG	3 cut(s)	49, 150, 403
PspN4I	GGNNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	138, 234
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	4 cut(s)	51, 152, 194, 405
SetI	ASST	8 cut(s)	24, 52, 66, 88, 235, 274, 313, 367
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	266
SspMI	CTAG	2 cut(s)	243, 439
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	4 cut(s)	49, 150, 192, 403
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	7, 115, 313
TasI	AATT	1 cut(s)	420
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	2 cut(s)	137, 233
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	347
XhoI	CTCGAG	1 cut(s)	114
XspI	CTAG	2 cut(s)	243, 439
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.