Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Reverse (-)

38258152 .. 38262901

Gene Structure 4750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTGTCTCCCGCTGTTGATTTGTTTCCTTTACAACGGCAGGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATAGGGTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTGTACCAGGCTACACGACTAGAAAAGTTTGTTACAGCTTATGGTCAGTTCCTACAAGCCAATGGCGAAAGCCCTGTGACTTGGAAAAGAGCGGCAAGCATGGATGAGGTGCTCCGAGAAGCAGATGTGATAAGCCTTCACCCGATTCTTGATAAAACCACTTATCATCTGATCAACAAGGAAAGATTAGCAACAATGAAGAAGGAAGCAGTCCTTATTAACTGTAGCAGAGGGCCTGTGGTTGATGAGGTTGCTCTTGTGGAGCATTTGAAACAAAATCCCATGTTTCGAGTTGGTCTTGACGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGACCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCCTCCAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTTAATGTCCTGGGTAAAATCAAAGGATATCCAGTTTGGTCTGATGCGAACCGGGTAGAACCATTCCTGAATGAGAATGCTCCACCACCAGCTGCCAGTCCTAGCATTGTTAACACCAAGGCCTTGGGTAATAATATCTATAAAACTATCAATGACACGCACAGAGGTCGAATTTCTTTGCTGAAAACTCTCTTTCACTGCAGGATTACCAGTTTCAAGGCTTTGAGCATTGATGTAAATGGCCACATTTTGAGCCTTCCTGGTGCAAATGGAGCAATTGTTATGCATGGAAACCAGGCTCTAGCGATACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

298

Amino Acids

32.8

Weight (kDa)

9.17

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh_C	PF02826	14 - 179	3.5e-41	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	251
AciI	CCGC	2 cut(s)	11, 251
AcoI	YGGCCR	1 cut(s)	823
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	527
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	164, 525
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	4 cut(s)	128, 136, 430, 799
AjnI	CCWGG	5 cut(s)	165, 490, 591, 841, 876
AluBI	AGCT	3 cut(s)	89, 197, 674
AluI	AGCT	3 cut(s)	89, 197, 674
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	3 cut(s)	392, 702, 823
ApeKI	GCWGC	2 cut(s)	578, 674
ApoI	RAATTY	1 cut(s)	753
Asp718I	GGTACC	1 cut(s)	523
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	555
BalI	TGGCCA	1 cut(s)	825
BanI	GGYRCC	1 cut(s)	523
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	565, 661
BccI	CCATC	2 cut(s)	115, 524
BceAI	ACGGC	1 cut(s)	52
BcgI	CGANNNNNNTGC	2 cut(s)	731, 765
BciT130I	CCWGG	5 cut(s)	167, 492, 593, 843, 878
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	635
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	3 cut(s)	179, 684, 884
BfmI	CTRYAG	2 cut(s)	382, 781
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	3 cut(s)	252, 579, 675
BlsI	GCNGC	3 cut(s)	253, 580, 676
Bme1390I	CCNGG	6 cut(s)	167, 492, 593, 635, 843, 878
BmeT110I	CYCGRG	1 cut(s)	555
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	6 cut(s)	167, 492, 593, 635, 843, 878
BmsI	GCATC	1 cut(s)	616
BpuMI	CCSGG	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	491, 592, 699, 705
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	3 cut(s)	614, 678, 792
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	5 cut(s)	167, 492, 593, 843, 878
BseDI	CCNNGG	4 cut(s)	491, 592, 699, 705
BseGI	GGATG	2 cut(s)	268, 478
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	3 cut(s)	614, 678, 792
BseXI	GCAGC	2 cut(s)	565, 661
BshFI	GGCC	3 cut(s)	394, 704, 825
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	11
BsmI	GAATGC	2 cut(s)	517, 664
BsnI	GGCC	3 cut(s)	394, 704, 825
BsoBI	CYCGRG	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	157, 330
BspACI	CCGC	2 cut(s)	11, 251
BspANI	GGCC	3 cut(s)	394, 704, 825
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	785
BspMI	ACCTGC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	523
BsrBI	CCGCTC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	614, 678, 792
BssECI	CCNNGG	4 cut(s)	491, 592, 699, 705
BssMI	GATC	2 cut(s)	157, 330
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	2 cut(s)	699, 705
Bst2UI	CCWGG	5 cut(s)	167, 492, 593, 843, 878
Bst4CI	ACNGT	3 cut(s)	73, 383, 894
BstACI	GRCGYC	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	256, 498
BstF5I	GGATG	2 cut(s)	268, 478
BstKTI	GATC	2 cut(s)	160, 333
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	2 cut(s)	157, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 575, 854
BstNI	CCWGG	5 cut(s)	167, 492, 593, 843, 878
BstSCI	CCNGG	6 cut(s)	165, 490, 591, 633, 841, 876
BstSFI	CTRYAG	2 cut(s)	382, 781
BstV1I	GCAGC	2 cut(s)	565, 661
BstXI	CCANNNNNNTGG	2 cut(s)	121, 706
BsuRI	GGCC	3 cut(s)	394, 704, 825
BtsCI	GGATG	2 cut(s)	268, 478
BtsI	GCAGTG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	778
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	256, 498
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	163, 524
CviAII	CATG	4 cut(s)	259, 442, 484, 869
CviQI	GTAC	2 cut(s)	163, 524
DpnI	GATC	2 cut(s)	159, 332
DpnII	GATC	2 cut(s)	157, 330
EaeI	YGGCCR	1 cut(s)	823
Eco130I	CCWWGG	2 cut(s)	699, 705
Eco147I	AGGCCT	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	527
Eco88I	CYCGRG	1 cut(s)	555
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	5 cut(s)	165, 490, 591, 841, 876
EcoRV	GATATC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	699, 705
EcoT22I	ATGCAT	1 cut(s)	870
ErhI	CCWWGG	2 cut(s)	699, 705
FaeI	CATG	4 cut(s)	262, 445, 487, 872
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	4 cut(s)	258, 441, 483, 868
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	109
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	252, 579, 675
FokI	GGATG	2 cut(s)	275, 485
Fsp4HI	GCNGC	3 cut(s)	252, 579, 675
FspBI	CTAG	3 cut(s)	179, 684, 884
GluI	GCNGC	3 cut(s)	252, 579, 675
HaeIII	GGCC	3 cut(s)	394, 704, 825
HapII	CCGG	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	4 cut(s)	262, 445, 487, 872
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HinfI	GANTC	2 cut(s)	304, 553
HpaI	GTTAAC	1 cut(s)	694
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	552, 694
Hpy188I	TCNGA	3 cut(s)	275, 330, 625
Hpy188III	TCNNGA	5 cut(s)	136, 308, 458, 557, 649
Hpy8I	GTNNAC	2 cut(s)	552, 694
HpyAV	CCTTC	5 cut(s)	122, 305, 355, 554, 848
HpyCH4III	ACNGT	3 cut(s)	73, 383, 894
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	107, 783, 848, 868
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 575, 854
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	262, 445, 487, 872
KpnI	GGTACC	1 cut(s)	527
Ksp22I	TGATCA	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	157, 330
LmnI	GCTCC	5 cut(s)	86, 276, 421, 667, 854
Lsp1109I	GCAGC	2 cut(s)	565, 661
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	3 cut(s)	179, 684, 884
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	190, 235
MalI	GATC	2 cut(s)	159, 332
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	2 cut(s)	157, 330
MboII	GAAGA	2 cut(s)	370, 520
MfeI	CAATTG	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	825
MluCI	AATT	3 cut(s)	147, 753, 858
MluNI	TGGCCA	1 cut(s)	825
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	7 cut(s)	259, 383, 400, 463, 537, 553, 740
Mox20I	TGGCCA	1 cut(s)	825
Mph1103I	ATGCAT	1 cut(s)	870
MscI	TGGCCA	1 cut(s)	825
MseI	TTAA	3 cut(s)	378, 585, 693
Msp20I	TGGCCA	1 cut(s)	825
MspA1I	CMGCKG	2 cut(s)	13, 674
MspI	CCGG	1 cut(s)	634
MspR9I	CCNGG	6 cut(s)	167, 492, 593, 635, 843, 878
MunI	CAATTG	1 cut(s)	858
Mva1269I	GAATGC	2 cut(s)	517, 664
MvaI	CCWGG	5 cut(s)	167, 492, 593, 843, 878
MwoI	GCNNNNNNNGC	3 cut(s)	64, 575, 854
NciI	CCSGG	1 cut(s)	635
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	2 cut(s)	157, 330
NlaIII	CATG	4 cut(s)	262, 445, 487, 872
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	870
PaeR7I	CTCGAG	1 cut(s)	555
PceI	AGGCCT	1 cut(s)	704
PctI	GAATGC	2 cut(s)	517, 664
PfeI	GAWTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	253, 580, 676
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp6I	CCWGG	5 cut(s)	165, 490, 591, 841, 876
PspGI	CCWGG	5 cut(s)	165, 490, 591, 841, 876
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PstI	CTGCAG	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	2 cut(s)	164, 525
RsaNI	GTAC	2 cut(s)	163, 524
SaqAI	TTAA	3 cut(s)	378, 585, 693
SatI	GCNGC	3 cut(s)	252, 579, 675
Sau3AI	GATC	2 cut(s)	157, 330
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	6 cut(s)	167, 492, 593, 635, 843, 878
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	2 cut(s)	382, 781
Sfr274I	CTCGAG	1 cut(s)	555
SlaI	CTCGAG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	555
SmoI	CTYRAG	1 cut(s)	555
Sse9I	AATT	3 cut(s)	147, 753, 858
SseBI	AGGCCT	1 cut(s)	704
SsiI	CCGC	2 cut(s)	11, 251
SspMI	CTAG	3 cut(s)	179, 684, 884
StuI	AGGCCT	1 cut(s)	704
StyD4I	CCNGG	6 cut(s)	165, 490, 591, 633, 841, 876
StyI	CCWWGG	2 cut(s)	699, 705
TaaI	ACNGT	3 cut(s)	73, 383, 894
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	448, 556, 751
TasI	AATT	3 cut(s)	147, 753, 858
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	1 cut(s)	304
Tru1I	TTAA	3 cut(s)	378, 585, 693
Tru9I	TTAA	3 cut(s)	378, 585, 693
TscAI	CASTG	1 cut(s)	785
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	578, 674
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	155, 371, 500
TspRI	CASTG	1 cut(s)	785
XapI	RAATTY	1 cut(s)	753
XhoI	CTCGAG	1 cut(s)	555
XspI	CTAG	3 cut(s)	179, 684, 884
ZraI	GACGTC	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.