Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

22183185 .. 22186505

Gene Structure 3321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001862

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGCCTGGAACTCGCTGGATCAATCTCTTAGTTGAACAAGACTGTAGAGTTGAAATATGCACCCAGAAGAAAACCATTCTATCTGTTGAGGATATCCTTGCTCTGATTGGTGACAAGTGTGATGGAGTAATTGGGCAGACTTCGTTCTCAGCACTGAGCAGAGCTGGAGGTAAAGCTTTCAGTAACATGGCTGTTGGGTATAACAATGTTGATGTCAGTGCTGCTAACAAATATGGAGTTGCTGTTGGAAACACTCCTGGAGTAGTTACAGAAACTACAGCAGAGCTGGCAGCTTCACTCTCATTATCAGCTGCTAGGAGAATAGTGGAAGCAGATGAGTTTATGAGGGCTGATTTATATGATGGATGGCTTCCCAATCTGTTTGTGGGAAACTTGCTAAAAGGGCAGACTGTTGGTGTGATTGGAGCTGGTCGTATGGGGTCTGCATATGCCAGAATGACGGTTGAAGGTTTCAAGATGAACCTAATTTACTATGATCTGTACCAGGCTGCACGACTAGAAAAGTTTGTTACAGCCAAAGGCGAAAGCCCTGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTCCGAGAAGCAGATGTGATAAGCCTTCACCCAATTCTTGATAAAACCACTTATCATCTGATCAACAAAGAAAGATTAGCAACGATGAAGAAGCGAGGGCCTGTGGTTGATGAGGTTGCTCTTGTGGAGCATTTGAAACAAAATCCCATGTTTCGAGTTGGTCTTGACGTCTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCCGTCCTGAAGAATGCCATCGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGAGAAGGAATGGCAACATTGGCTGCTCTTAATGTCCTAGGTAAAATCAAAGGATATCCAGTTTGGTCTGATGCGAACCGGGTAGAACCATTCCTGAATGAGAATGCTCCACCACCAGCTGCCAGTCCTAGCATTGTTAACGCCAAGGCCTTAGGTAATAATATCTATAAAACTATCAATGACACGCACAGAGGTCGATTTTCTTTGCTGAAAACTATGTCTCACTGCAGGATTATCAGTTTCAAGGCTTTGAGCATTGCTGTAAATGGCCACATTTTGAGCCTTCCTGGTGCAAATGGAGCAATTGTTATGCATGGAAACCAGGCTCTAGCGATACTATGGTTATCTGGAGTTCTAACAAAAGTTGTATATTTGAAAGATGAATGTGGTCAAACGTGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

418

Amino Acids

45.25

Weight (kDa)

8.85

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	55 - 303	1.1e-14	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	100 - 277	3.6e-35	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	759
Acc65I	GGTACC	1 cut(s)	817
AccB1I	GGYRCC	1 cut(s)	817
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	1117
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	2 cut(s)	503, 819
AflIII	ACRYGT	1 cut(s)	1244
AgsI	TTSAA	7 cut(s)	35, 53, 467, 475, 724, 1093, 1225
AjnI	CCWGG	6 cut(s)	4, 256, 504, 784, 1135, 1170
AluBI	AGCT	7 cut(s)	164, 176, 286, 293, 311, 428, 968
AluI	AGCT	7 cut(s)	164, 176, 286, 293, 311, 428, 968
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	1074
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	3 cut(s)	686, 996, 1117
ApeKI	GCWGC	7 cut(s)	221, 290, 311, 509, 569, 872, 968
Asp718I	GGTACC	1 cut(s)	817
AspA2I	CCTAGG	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	1 cut(s)	929
AsuHPI	GGTGA	2 cut(s)	122, 608
AvaI	CYCGRG	1 cut(s)	849
AvrII	CCTAGG	1 cut(s)	886
AxyI	CCTNAGG	1 cut(s)	1000
BaeI	ACNNNNGTAYC	2 cut(s)	1175, 1208
BalI	TGGCCA	1 cut(s)	1119
BanI	GGYRCC	1 cut(s)	817
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	7 cut(s)	208, 298, 302, 496, 581, 859, 955
BccI	CCATC	4 cut(s)	116, 356, 360, 818
BceAI	ACGGC	1 cut(s)	779
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BciT130I	CCWGG	6 cut(s)	6, 258, 506, 786, 1137, 1172
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	929
BcoDI	GTCTC	1 cut(s)	1074
BfaI	CTAG	5 cut(s)	315, 518, 887, 978, 1178
BfmI	CTRYAG	3 cut(s)	43, 276, 1075
BisI	GCNGC	7 cut(s)	222, 291, 312, 510, 570, 873, 969
BlnI	CCTAGG	1 cut(s)	886
BlsI	GCNGC	7 cut(s)	223, 292, 313, 511, 571, 874, 970
Bme1390I	CCNGG	7 cut(s)	6, 258, 506, 786, 929, 1137, 1172
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	819
BmrFI	CCNGG	7 cut(s)	6, 258, 506, 786, 929, 1137, 1172
BmsI	GCATC	1 cut(s)	910
BpmI	CTGGAG	3 cut(s)	186, 279, 1218
BpuMI	CCSGG	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	3 cut(s)	785, 886, 993
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 258, 1140, 1170
Bse1I	ACTGG	2 cut(s)	908, 972
Bse21I	CCTNAGG	1 cut(s)	1000
Bse3DI	GCAATG	2 cut(s)	825, 1104
BseBI	CCWGG	6 cut(s)	6, 258, 506, 786, 1137, 1172
BseDI	CCNNGG	3 cut(s)	785, 886, 993
BseGI	GGATG	3 cut(s)	371, 586, 772
BseMI	GCAATG	2 cut(s)	825, 1104
BseMII	CTCAG	2 cut(s)	146, 162
BseNI	ACTGG	2 cut(s)	908, 972
BseXI	GCAGC	7 cut(s)	208, 298, 302, 496, 581, 859, 955
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	688, 998, 1119
BshNI	GGYRCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	849
BsiSI	CCGG	1 cut(s)	928
BsmAI	GTCTC	1 cut(s)	1074
BsmI	GAATGC	2 cut(s)	811, 958
BsnI	GGCC	3 cut(s)	688, 998, 1119
BsoBI	CYCGRG	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	18, 496, 648
BspANI	GGCC	3 cut(s)	688, 998, 1119
BspCNI	CTCAG	2 cut(s)	147, 161
BspLI	GGNNCC	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	1079
BspPI	GGATC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	817
BsrDI	GCAATG	2 cut(s)	825, 1104
BsrI	ACTGG	2 cut(s)	908, 972
BssECI	CCNNGG	3 cut(s)	785, 886, 993
BssMI	GATC	3 cut(s)	18, 496, 648
BssNI	GRCGYC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	886, 993
Bst2UI	CCWGG	6 cut(s)	6, 258, 506, 786, 1137, 1172
Bst4CI	ACNGT	3 cut(s)	44, 412, 463
BstACI	GRCGYC	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	288, 574, 792
BstDEI	CTNAG	4 cut(s)	28, 148, 155, 1000
BstF5I	GGATG	3 cut(s)	371, 586, 772
BstKTI	GATC	3 cut(s)	21, 499, 651
BstMAI	GTCTC	1 cut(s)	1074
BstMBI	GATC	3 cut(s)	18, 496, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 403, 869, 1148
BstNI	CCWGG	6 cut(s)	6, 258, 506, 786, 1137, 1172
BstSCI	CCNGG	7 cut(s)	4, 256, 504, 784, 927, 1135, 1170
BstSFI	CTRYAG	3 cut(s)	43, 276, 1075
BstV1I	GCAGC	7 cut(s)	208, 298, 302, 496, 581, 859, 955
Bsu36I	CCTNAGG	1 cut(s)	1000
BsuRI	GGCC	3 cut(s)	688, 998, 1119
BtsCI	GGATG	3 cut(s)	371, 586, 772
BtsI	GCAGTG	1 cut(s)	1072
BtsIMutI	CAGTG	3 cut(s)	152, 223, 1072
Cac8I	GCNNGC	3 cut(s)	288, 574, 792
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	2 cut(s)	502, 818
CviAII	CATG	5 cut(s)	187, 577, 736, 778, 1163
CviQI	GTAC	2 cut(s)	502, 818
DdeI	CTNAG	4 cut(s)	28, 148, 155, 1000
DpnI	GATC	3 cut(s)	20, 498, 650
DpnII	GATC	3 cut(s)	18, 496, 648
EaeI	YGGCCR	1 cut(s)	1117
Eco130I	CCWWGG	2 cut(s)	886, 993
Eco147I	AGGCCT	1 cut(s)	998
Eco32I	GATATC	2 cut(s)	94, 905
Eco57I	CTGAAG	1 cut(s)	821
Eco81I	CCTNAGG	1 cut(s)	1000
Eco88I	CYCGRG	1 cut(s)	849
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	6 cut(s)	4, 256, 504, 784, 1135, 1170
EcoRV	GATATC	2 cut(s)	94, 905
EcoT14I	CCWWGG	2 cut(s)	886, 993
EcoT22I	ATGCAT	1 cut(s)	1164
ErhI	CCWWGG	2 cut(s)	886, 993
FaeI	CATG	5 cut(s)	190, 580, 739, 781, 1166
FatI	CATG	5 cut(s)	186, 576, 735, 777, 1162
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	648
Fnu4HI	GCNGC	7 cut(s)	222, 291, 312, 510, 570, 873, 969
FokI	GGATG	3 cut(s)	378, 593, 779
Fsp4HI	GCNGC	7 cut(s)	222, 291, 312, 510, 570, 873, 969
FspBI	CTAG	5 cut(s)	315, 518, 887, 978, 1178
GluI	GCNGC	7 cut(s)	222, 291, 312, 510, 570, 873, 969
GsuI	CTGGAG	3 cut(s)	186, 279, 1218
HaeIII	GGCC	3 cut(s)	688, 998, 1119
HapII	CCGG	1 cut(s)	928
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	190, 580, 739, 781, 1166
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	1 cut(s)	847
HpaI	GTTAAC	1 cut(s)	988
HpaII	CCGG	1 cut(s)	928
HphI	GGTGA	2 cut(s)	122, 608
Hpy166II	GTNNAC	2 cut(s)	846, 988
Hpy188I	TCNGA	5 cut(s)	105, 593, 648, 919, 1253
Hpy188III	TCNNGA	7 cut(s)	475, 626, 752, 799, 851, 943, 1197
Hpy8I	GTNNAC	2 cut(s)	846, 988
HpyAV	CCTTC	4 cut(s)	461, 623, 848, 1142
HpyCH4III	ACNGT	3 cut(s)	44, 412, 463
HpyCH4IV	ACGT	2 cut(s)	756, 1244
HpyCH4V	TGCA	6 cut(s)	60, 446, 512, 1077, 1142, 1162
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 403, 869, 1148
HpyF3I	CTNAG	4 cut(s)	28, 148, 155, 1000
HpySE526I	ACGT	2 cut(s)	756, 1244
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	5 cut(s)	190, 580, 739, 781, 1166
KpnI	GGTACC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	648
KspAI	GTTAAC	1 cut(s)	988
Kzo9I	GATC	3 cut(s)	18, 496, 648
LmnI	GCTCC	5 cut(s)	425, 594, 715, 961, 1148
Lsp1109I	GCAGC	7 cut(s)	208, 298, 302, 496, 581, 859, 955
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	5 cut(s)	315, 518, 887, 978, 1178
MaeII	ACGT	2 cut(s)	756, 1244
MaeIII	GTNAC	5 cut(s)	110, 182, 265, 529, 553
MalI	GATC	3 cut(s)	20, 498, 650
MboI	GATC	3 cut(s)	18, 496, 648
MboII	GAAGA	3 cut(s)	79, 688, 814
MfeI	CAATTG	1 cut(s)	1152
MhlI	GDGCHC	1 cut(s)	591
MlsI	TGGCCA	1 cut(s)	1119
MluCI	AATT	4 cut(s)	129, 486, 621, 1152
MluNI	TGGCCA	1 cut(s)	1119
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	82, 161, 339, 577, 677, 694, 757, 831, 1034
Mox20I	TGGCCA	1 cut(s)	1119
Mph1103I	ATGCAT	1 cut(s)	1164
MscI	TGGCCA	1 cut(s)	1119
MseI	TTAA	2 cut(s)	879, 987
Msp20I	TGGCCA	1 cut(s)	1119
MspA1I	CMGCKG	2 cut(s)	311, 968
MspI	CCGG	1 cut(s)	928
MspR9I	CCNGG	7 cut(s)	6, 258, 506, 786, 929, 1137, 1172
MunI	CAATTG	1 cut(s)	1152
Mva1269I	GAATGC	2 cut(s)	811, 958
MvaI	CCWGG	6 cut(s)	6, 258, 506, 786, 1137, 1172
MwoI	GCNNNNNNNGC	4 cut(s)	287, 403, 869, 1148
NciI	CCSGG	1 cut(s)	929
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	3 cut(s)	18, 496, 648
NlaIII	CATG	5 cut(s)	190, 580, 739, 781, 1166
NlaIV	GGNNCC	1 cut(s)	819
NmuCI	GTSAC	2 cut(s)	110, 553
NsiI	ATGCAT	1 cut(s)	1164
PaeR7I	CTCGAG	1 cut(s)	849
PceI	AGGCCT	1 cut(s)	998
PctI	GAATGC	2 cut(s)	811, 958
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	7 cut(s)	223, 292, 313, 511, 571, 874, 970
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
Psp6I	CCWGG	6 cut(s)	4, 256, 504, 784, 1135, 1170
PspGI	CCWGG	6 cut(s)	4, 256, 504, 784, 1135, 1170
PspN4I	GGNNCC	1 cut(s)	819
PspPI	GGNCC	1 cut(s)	686
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
PstI	CTGCAG	1 cut(s)	1079
PvuII	CAGCTG	2 cut(s)	311, 968
RsaI	GTAC	2 cut(s)	503, 819
RsaNI	GTAC	2 cut(s)	502, 818
SaqAI	TTAA	2 cut(s)	879, 987
SatI	GCNGC	7 cut(s)	222, 291, 312, 510, 570, 873, 969
Sau3AI	GATC	3 cut(s)	18, 496, 648
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	7 cut(s)	6, 258, 506, 786, 929, 1137, 1172
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	910
SfcI	CTRYAG	3 cut(s)	43, 276, 1075
Sfr274I	CTCGAG	1 cut(s)	849
SlaI	CTCGAG	1 cut(s)	849
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
Sse9I	AATT	4 cut(s)	129, 486, 621, 1152
SseBI	AGGCCT	1 cut(s)	998
SspMI	CTAG	5 cut(s)	315, 518, 887, 978, 1178
StuI	AGGCCT	1 cut(s)	998
StyD4I	CCNGG	7 cut(s)	4, 256, 504, 784, 927, 1135, 1170
StyI	CCWWGG	2 cut(s)	886, 993
TaaI	ACNGT	3 cut(s)	44, 412, 463
TaiI	ACGT	2 cut(s)	759, 1247
TaqI	TCGA	3 cut(s)	742, 850, 1045
TasI	AATT	4 cut(s)	129, 486, 621, 1152
Tru1I	TTAA	2 cut(s)	879, 987
Tru9I	TTAA	2 cut(s)	879, 987
TscAI	CASTG	3 cut(s)	159, 223, 1079
TseFI	GTSAC	2 cut(s)	110, 553
TseI	GCWGC	7 cut(s)	221, 290, 311, 509, 569, 872, 968
Tsp45I	GTSAC	2 cut(s)	110, 553
TspDTI	ATGAA	4 cut(s)	494, 689, 794, 1245
TspRI	CASTG	3 cut(s)	159, 223, 1079
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XhoI	CTCGAG	1 cut(s)	849
XmaJI	CCTAGG	1 cut(s)	886
XspI	CTAG	5 cut(s)	315, 518, 887, 978, 1178
ZraI	GACGTC	1 cut(s)	757
Zsp2I	ATGCAT	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.