Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

20537437 .. 20538141

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCAACTTTTGTTCAGTCCGTCGGCTTCCCAGTTCTTCTTCCTCTCCTCTGTTTCTTTTCATCAACAACCACATTGACTACAAACTCTGTTGGTAGTACTACTTCATCATATGCTTCCAAACTACCAAAACTCATAACAATGGTATTCCTCTACGTTGCCCTTGGCTTGCTTTTGACGGCAGACAACATGATGTACTCTTACGGGCTTCTCTTTCTTCCCATCTCTACTTACTCTTTACTATGTGCTACCCAATTCGCCTTCAATGCGTTGTTCTCTTTCTTTCTGAACTCTCAAAAATTTACTCCTTTTATACTCAACTCTCTTGTCCTTGTCACTATGTCTGCCTCCGTTCTCGCCATCAATTCTGACTCCGAAAACACTACCAATCACATCTCTAAAGGTAAGTATGTGATCGGTTTCTTGTGTACCTTCGGCGCCTCCACGACTTACTCATTGTACCTTTCCCTTGTGCAACTTTCATTCCAGCTGAAGGTGATAAAAGGAGAGACATTTTCTACTGTCTTGGATATGCAAATAATGCAATTATACCCATCGTTTGTTGCGACATGTGGTTGTATGGTAGGGCTTTTTGCAAGTGGGGAATGGAAAGGTTTGGAAAGTGAGATGAAGGAATACAAAGAAGGAAGAGTCTTTTATATAATAACCCTGCTCTGGACTGCTGTGTCATGGCAAATTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

234

Amino Acids

25.88

Weight (kDa)

7.52

Isoelectric Point (pI)

27.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	1 - 234	1.3e-72	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	299, 696
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	4 cut(s)	100, 197, 430, 461
AfiI	CCNNNNNNNGG	2 cut(s)	493, 675
AflIII	ACRYGT	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	1 cut(s)	490
AluI	AGCT	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	503
ApoI	RAATTY	2 cut(s)	299, 696
AspLEI	GCGC	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	437
BarI	GAAGNNNNNNTAC	2 cut(s)	88, 120
BccI	CCATC	3 cut(s)	230, 368, 562
BceAI	ACGGC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	439
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	493, 675
Bse1I	ACTGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	493, 675
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	493, 675
BsmAI	GTCTC	1 cut(s)	503
Bsp143I	GATC	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	437
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 541
BstNSI	RCATGY	1 cut(s)	573
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	1 cut(s)	440
Csp6I	GTAC	4 cut(s)	99, 196, 429, 460
CviAII	CATG	3 cut(s)	190, 570, 690
CviJI	RGCY	5 cut(s)	27, 168, 208, 490, 589
CviKI_1	RGCY	5 cut(s)	27, 168, 208, 490, 589
CviQI	GTAC	4 cut(s)	99, 196, 429, 460
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	193, 573, 693
FatI	CATG	3 cut(s)	189, 569, 689
FauNDI	CATATG	1 cut(s)	112
GlaI	GCGC	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	441
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	193, 573, 693
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	2 cut(s)	371, 651
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	3 cut(s)	288, 370, 376
Hpy188III	TCNNGA	1 cut(s)	676
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	271, 442, 487, 625, 638
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	475, 535, 544, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 541
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	193, 573, 693
HspAI	GCGC	1 cut(s)	438
KasI	GGCGCC	1 cut(s)	437
Kzo9I	GATC	1 cut(s)	414
LpnPI	CCDG	4 cut(s)	45, 500, 661, 683
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MboII	GAAGA	4 cut(s)	29, 32, 209, 660
MluCI	AATT	5 cut(s)	254, 299, 364, 545, 696
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	365, 660
MnlI	CCTC	5 cut(s)	54, 59, 161, 358, 451
MseI	TTAA	1 cut(s)	703
MslI	CAYNNNNRTG	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	266, 541
NarI	GGCGCC	1 cut(s)	438
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	3 cut(s)	193, 573, 693
NlaIV	GGNNCC	1 cut(s)	439
NmuCI	GTSAC	1 cut(s)	334
NspI	RCATGY	1 cut(s)	573
PciI	ACATGT	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	563
PleI	GAGTC	2 cut(s)	365, 659
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	2 cut(s)	365, 659
PscI	ACATGT	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	439
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	4 cut(s)	100, 197, 430, 461
RsaNI	GTAC	4 cut(s)	99, 196, 429, 460
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	703
Sau3AI	GATC	1 cut(s)	414
ScaI	AGTACT	1 cut(s)	100
SchI	GAGTC	2 cut(s)	365, 660
SetI	ASST	7 cut(s)	159, 406, 434, 465, 492, 498, 616
SfoI	GGCGCC	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	5 cut(s)	254, 299, 364, 545, 696
SspDI	GGCGCC	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	523
TaiI	ACGT	1 cut(s)	159
TasI	AATT	5 cut(s)	254, 299, 364, 545, 696
TatI	WGTACW	2 cut(s)	98, 195
Tru1I	TTAA	1 cut(s)	703
Tru9I	TTAA	1 cut(s)	703
TseFI	GTSAC	1 cut(s)	334
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	51, 96, 471, 644
TspGWI	ACGGA	2 cut(s)	10, 340
XapI	RAATTY	2 cut(s)	299, 696
XceI	RCATGY	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.