Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005731

Physical Location & Seq

Genomic Coordinates Forward (+)

21846712 .. 21849547

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTTCAGGTGTGGAACCCAAATGGGAAATACAGAGTTGTCAGCACAAAACCCATGCCTGGAACTCGCTGGATCAATCTCTTAATTGAACAAGACTGCAGAGTTGAAATATGTACCCGGAAGAAAACAATTCTGTCTGTCGAGGATATCATTGCTCTGATTGGGGATAAGTGTGATGGAGTTATTGGACAGTTGACTGAAGACTGGGGAGAGACTTTGTTCTCAGCACTGAGCAGAGCAGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGCTATAACAATGTTGATGTCAATGCTGCTAACAAGTATGGGGTTGCTGTTGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGCTGGCAGCTTCACTTTCTTTATCAGCTGCTCGAAGAATAGTTGAAGCAGATGAATTTATGAGGGCTGGCTTATATGACGGATGGCTTCCTAATCTGTTTGTGGGAAACTTGCTCAAAGGGCAGACTGTTGGAGTGATTGGAGCTGGTCGTATAGGTTCTGCATATGCCAGAATGATGGTTGAAGGTTTCAAGATGAACCTGATTTACTATGACCTTTACCAGGCTACACGGCTAGAAAAGTTTGTTACAGCTTATGCTGAGTTCCTAAAAGCCAATGGTGAACAGCCCGTGACTTGGAAAAGAGCAGCAAGCATGGATGAGGTGCTCCGAGAAGCAGATGTCATAAGCCTTCACCCAATTCTGGATAAAACCACTTATCATCTGGTCAACAAAGAAAGACTGTCAATTATGAAGAAGGAAGCAATCCTTGTAAACTGTAGCAGAGGGCCTGTGATTGATGAAGTTGCTCTTGTAGAGCATTTGAAACAAAATCCTATGTTTCGAGTTGGTCTGGATGTGTTTGAGGATGAGCCTTACATGAAACCTGGGCTTGCTGACTTGAAGAATGCTGTTGTGGTACCTCACATTGCTTCTGCTTCCAAGTGGACTCGTGAAGGAATGGCTACACTGGCTGCTCTCAATGTTCTGGGAAAAATTAAAGGATATCCAGTTTGGTCAGATCCAAACCGGATAGAACCATTCCTCAACGAAAATGTTCCACCTCCAGCTGCCAGTCCTAGCATTGTTAATTCAAAATCCTTGGGTTTACCAGTTTCAAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003824 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0008465 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009853 GO:0009854 GO:0009987 GO:0009991 GO:0010035 GO:0016491 GO:0016614 GO:0016616 GO:0016618 GO:0030267 GO:0031668 GO:0033554 GO:0042221 GO:0042579 GO:0042631 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071478 GO:0071482 GO:0071496 GO:0097159 GO:0104004 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

382

Amino Acids

41.81

Weight (kDa)

7.62

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68010 AT1G68010 AT1G68010
fragaria_vesca	FvH4_5g30340 FvH4_5g30340
malus_domestica	MD05G1122100.v1.1
prunus_persica	Prupe.7G264000_v2.0.a1 Prupe.8G166000_v2.0.a1 Prupe.8G166000_v2.0.a1
pyrus_communis	pycom05g11630 pycom10g10740
rosa_chinensis	RchiOBHm_Chr7g0224721 RchiOBHm_Chr7g0224761
rosa_laevigata	RLG00000001858 RLG00000001862
rosa_multiflora	Rmu_sc0000144.1_g000017 Rmu_sc0000144.1_g000025
rosa_roxburghii	Rroxscaffold_3G00234460
rosa_rugosa	Rorug07G0225200 Rorug07G0225400
rosa_samantha	Rh7AG377600 Rh7AG377700 Rh7BG361200 Rh7BG361500 Rh7CG396400 Rh7CG396600 Rh7DG371300
rosa_wichuraiana	Rw7G031340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AclWI	GGATC	2 cut(s)	80, 1034
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	3 cut(s)	115, 339, 939
AfiI	CCNNNNNNNGG	4 cut(s)	59, 580, 654, 721
AgsI	TTSAA	9 cut(s)	89, 107, 404, 542, 550, 844, 922, 1113, 1137
AjnI	CCWGG	4 cut(s)	58, 331, 579, 904
AluBI	AGCT	7 cut(s)	251, 361, 368, 386, 503, 611, 1088
AluI	AGCT	7 cut(s)	251, 361, 368, 386, 503, 611, 1088
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	80, 1034
AoxI	GGCC	1 cut(s)	806
ApeKI	GCWGC	6 cut(s)	296, 365, 386, 665, 992, 1088
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	1074
Asp718I	GGTACC	1 cut(s)	937
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	650, 704
BanI	GGYRCC	1 cut(s)	937
BauI	CACGAG	1 cut(s)	969
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	6 cut(s)	283, 373, 377, 677, 979, 1075
BccI	CCATC	3 cut(s)	170, 435, 529
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	4 cut(s)	60, 333, 581, 906
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	593, 1098
BfmI	CTRYAG	3 cut(s)	97, 351, 796
BisI	GCNGC	6 cut(s)	297, 366, 387, 666, 993, 1089
BlsI	GCNGC	6 cut(s)	298, 367, 388, 667, 994, 1090
BmcAI	AGTACT	1 cut(s)	339
Bme1390I	CCNGG	5 cut(s)	60, 118, 333, 581, 906
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	2 cut(s)	17, 939
BmrFI	CCNGG	5 cut(s)	60, 118, 333, 581, 906
BmrI	ACTGGG	1 cut(s)	214
BmuI	ACTGGG	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	2 cut(s)	354, 1068
BpuMI	CCSGG	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	905, 1119
BsaWI	WCCGGW	1 cut(s)	1047
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 580, 654, 721
Bse1I	ACTGG	5 cut(s)	209, 993, 1028, 1092, 1130
Bse3DI	GCAATG	2 cut(s)	150, 945
BseBI	CCWGG	4 cut(s)	60, 333, 581, 906
BseDI	CCNNGG	2 cut(s)	905, 1119
BseGI	GGATG	4 cut(s)	446, 682, 880, 892
BseLI	CCNNNNNNNGG	4 cut(s)	59, 580, 654, 721
BseMI	GCAATG	2 cut(s)	150, 945
BseMII	CTCAG	3 cut(s)	221, 237, 609
BseNI	ACTGG	5 cut(s)	209, 993, 1028, 1092, 1130
BseXI	GCAGC	6 cut(s)	283, 373, 377, 677, 979, 1075
BshFI	GGCC	1 cut(s)	808
BshNI	GGYRCC	1 cut(s)	937
BsiHKAI	GWGCWC	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	118, 1048
BslI	CCNNNNNNNGG	4 cut(s)	59, 580, 654, 721
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	1 cut(s)	808
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	2 cut(s)	72, 1039
BspANI	GGCC	1 cut(s)	808
BspCNI	CTCAG	3 cut(s)	222, 236, 610
BspLI	GGNNCC	2 cut(s)	17, 939
BspMAI	CTGCAG	1 cut(s)	101
BspPI	GGATC	2 cut(s)	80, 1034
BspT107I	GGYRCC	1 cut(s)	937
BsrDI	GCAATG	2 cut(s)	150, 945
BsrI	ACTGG	5 cut(s)	209, 993, 1028, 1092, 1130
BssECI	CCNNGG	2 cut(s)	905, 1119
BssMI	GATC	2 cut(s)	72, 1039
BssSI	CACGAG	1 cut(s)	969
BssT1I	CCWWGG	1 cut(s)	1119
Bst2BI	CACGAG	1 cut(s)	969
Bst2UI	CCWGG	4 cut(s)	60, 333, 581, 906
Bst4CI	ACNGT	4 cut(s)	192, 487, 762, 797
BstC8I	GCNNGC	4 cut(s)	363, 427, 670, 912
BstDEI	CTNAG	3 cut(s)	223, 230, 618
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	4 cut(s)	446, 682, 880, 892
BstKTI	GATC	2 cut(s)	75, 1042
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	72, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 478, 989
BstNI	CCWGG	4 cut(s)	60, 333, 581, 906
BstSCI	CCNGG	5 cut(s)	58, 116, 331, 579, 904
BstSFI	CTRYAG	3 cut(s)	97, 351, 796
BstV1I	GCAGC	6 cut(s)	283, 373, 377, 677, 979, 1075
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	1039
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	1039
BsuRI	GGCC	1 cut(s)	808
BtsCI	GGATG	4 cut(s)	446, 682, 880, 892
BtsIMutI	CAGTG	2 cut(s)	227, 986
Cac8I	GCNNGC	4 cut(s)	363, 427, 670, 912
Cfr13I	GGNCC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	114, 338, 938
CviAII	CATG	4 cut(s)	55, 262, 673, 898
CviQI	GTAC	3 cut(s)	114, 338, 938
DdeI	CTNAG	3 cut(s)	223, 230, 618
DpnI	GATC	2 cut(s)	74, 1041
DpnII	GATC	2 cut(s)	72, 1039
Eco130I	CCWWGG	1 cut(s)	1119
Eco32I	GATATC	2 cut(s)	148, 1025
Eco57I	CTGAAG	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRII	CCWGG	4 cut(s)	58, 331, 579, 904
EcoRV	GATATC	2 cut(s)	148, 1025
EcoT14I	CCWWGG	1 cut(s)	1119
ErhI	CCWWGG	1 cut(s)	1119
FaeI	CATG	4 cut(s)	58, 265, 676, 901
FalI	AAGNNNNNCTT	4 cut(s)	771, 803, 813, 845
FatI	CATG	4 cut(s)	54, 261, 672, 897
FauNDI	CATATG	1 cut(s)	523
Fnu4HI	GCNGC	6 cut(s)	297, 366, 387, 666, 993, 1089
FokI	GGATG	4 cut(s)	453, 689, 887, 899
Fsp4HI	GCNGC	6 cut(s)	297, 366, 387, 666, 993, 1089
FspBI	CTAG	2 cut(s)	593, 1098
GluI	GCNGC	6 cut(s)	297, 366, 387, 666, 993, 1089
GsuI	CTGGAG	2 cut(s)	354, 1068
HaeIII	GGCC	1 cut(s)	808
HapII	CCGG	2 cut(s)	118, 1048
Hin1II	CATG	4 cut(s)	58, 265, 676, 901
HincII	GTYRAC	2 cut(s)	195, 748
HindII	GTYRAC	2 cut(s)	195, 748
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	967
HpaII	CCGG	2 cut(s)	118, 1048
HphI	GGTGA	2 cut(s)	650, 704
Hpy166II	GTNNAC	6 cut(s)	195, 641, 748, 793, 966, 1127
Hpy188I	TCNGA	3 cut(s)	159, 689, 1039
Hpy188III	TCNNGA	4 cut(s)	550, 722, 872, 971
Hpy8I	GTNNAC	6 cut(s)	195, 641, 748, 793, 966, 1127
HpyAV	CCTTC	4 cut(s)	536, 719, 769, 968
HpyCH4III	ACNGT	4 cut(s)	192, 487, 762, 797
HpyCH4V	TGCA	2 cut(s)	99, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 478, 989
HpyF3I	CTNAG	3 cut(s)	223, 230, 618
Hsp92II	CATG	4 cut(s)	58, 265, 676, 901
KpnI	GGTACC	1 cut(s)	941
Kzo9I	GATC	2 cut(s)	72, 1039
LmnI	GCTCC	2 cut(s)	500, 690
Lsp1109I	GCAGC	6 cut(s)	283, 373, 377, 677, 979, 1075
MaeI	CTAG	2 cut(s)	593, 1098
MaeIII	GTNAC	3 cut(s)	257, 604, 649
MalI	GATC	2 cut(s)	74, 1041
MboI	GATC	2 cut(s)	72, 1039
MboII	GAAGA	5 cut(s)	133, 212, 405, 784, 934
MflI	RGATCY	1 cut(s)	1039
MhlI	GDGCHC	1 cut(s)	687
MluCI	AATT	7 cut(s)	84, 129, 413, 717, 765, 1014, 1108
MlyI	GAGTC	1 cut(s)	961
MmeI	TCCRAC	2 cut(s)	301, 469
MnlI	CCTC	9 cut(s)	136, 236, 414, 673, 797, 877, 951, 1073, 1092
MroXI	GAANNNNTTC	1 cut(s)	1074
MseI	TTAA	3 cut(s)	83, 1017, 1107
MspA1I	CMGCKG	2 cut(s)	386, 1088
MspI	CCGG	2 cut(s)	118, 1048
MspR9I	CCNGG	5 cut(s)	60, 118, 333, 581, 906
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	4 cut(s)	60, 333, 581, 906
MwoI	GCNNNNNNNGC	3 cut(s)	362, 478, 989
NciI	CCSGG	1 cut(s)	118
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	2 cut(s)	72, 1039
NlaIII	CATG	4 cut(s)	58, 265, 676, 901
NlaIV	GGNNCC	2 cut(s)	17, 939
NmuCI	GTSAC	1 cut(s)	649
PctI	GAATGC	1 cut(s)	931
PdmI	GAANNNNTTC	1 cut(s)	1074
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	298, 367, 388, 667, 994, 1090
PleI	GAGTC	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	961
Psp6I	CCWGG	4 cut(s)	58, 331, 579, 904
PspGI	CCWGG	4 cut(s)	58, 331, 579, 904
PspN4I	GGNNCC	2 cut(s)	17, 939
PspPI	GGNCC	1 cut(s)	806
PsrI	GAACNNNNNNTAC	2 cut(s)	548, 580
PstI	CTGCAG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	1039
PvuII	CAGCTG	2 cut(s)	386, 1088
RsaI	GTAC	3 cut(s)	115, 339, 939
RsaNI	GTAC	3 cut(s)	114, 338, 938
SaqAI	TTAA	3 cut(s)	83, 1017, 1107
SatI	GCNGC	6 cut(s)	297, 366, 387, 666, 993, 1089
Sau3AI	GATC	2 cut(s)	72, 1039
Sau96I	GGNCC	1 cut(s)	806
ScaI	AGTACT	1 cut(s)	339
SchI	GAGTC	1 cut(s)	961
ScrFI	CCNGG	5 cut(s)	60, 118, 333, 581, 906
SduI	GDGCHC	1 cut(s)	687
SfcI	CTRYAG	3 cut(s)	97, 351, 796
Sse9I	AATT	7 cut(s)	84, 129, 413, 717, 765, 1014, 1108
SspMI	CTAG	2 cut(s)	593, 1098
StyD4I	CCNGG	5 cut(s)	58, 116, 331, 579, 904
StyI	CCWWGG	1 cut(s)	1119
TaaI	ACNGT	4 cut(s)	192, 487, 762, 797
TaqI	TCGA	3 cut(s)	141, 391, 862
TasI	AATT	7 cut(s)	84, 129, 413, 717, 765, 1014, 1108
TatI	WGTACW	1 cut(s)	337
Tru1I	TTAA	3 cut(s)	83, 1017, 1107
Tru9I	TTAA	3 cut(s)	83, 1017, 1107
TscAI	CASTG	2 cut(s)	234, 993
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	6 cut(s)	296, 365, 386, 665, 992, 1088
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	5 cut(s)	426, 569, 785, 834, 914
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	2 cut(s)	234, 993
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	2 cut(s)	593, 1098
ZrmI	AGTACT	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.