pycom10g10870

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0028987
Physical Location & Seq
Reverse (-)
14318813 .. 14324523
5711 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGGATTTTGATGAGTATGATTATTTAGAGAAAACGGTTGAAAATCCTGAACCCCCGAAATCAAAAGAAACTGTGAATGGTGGTGAGGAAGCTTCAAAATCTGGAGAGAAAGGTCGCAGCCGAAGTTCAAGGCATAAAGGTCATGAGAAGGGTCACGATGAGGAGCGTCACTCAAAGCGTTCAAAATCGGGAGATGAGTCCCATGAACGTGGTAATGATAGGCACAGAGAGAGGGGATCTTCTCGTCACCGCTCACAGTCCAGAGACAGAGAAAAGGATCGCCACAGGAGTAGCCGGGATCATAGAGGTAGGGAAGACAGAGAAAGAGAGGAAAGAAATGGTAAGGAGAGAAACAGGGAAAGAGACAAAGAGCGGGATCCCGATCGTGATAGAGACAGGAGAGAACGTGACCGCGAGGGTGACAGGGACCGGGAGAAGGATAAAGAGCAACCACGTCAAAGCAGGAGCCATTCAGAAAGGCGTCGAAGTGATCGGGATGAAAGAGAAAGGAGCCGGGAGGTGGAGCATAAAGAAAAAGATAAGGAGAAGGATTTGAGGGAGCGGGAAAAAGAAAACAGAAGACATAAAGACAAGAAGGAAGAAGGGACAGAACCAGAGTCTGATCCTGAGAGAGATCAAAGGACAGTATTTGCTTATCAGATTTGTTTGAAGGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGAAAGGTCCGCGATGTACGTCTTATTATGGATCGCAATTCAAGACGTTCGAAGGGAGTTGGGTATATTGAGTTTTATGATGCGATGTCAGTACCTATGGCGATCGCACTCTCTGGTCAGCCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAGGCTGAGAAGAATCTAGTTCAGTCAACAACTTCTGTTGTCACTGGACCAGGTGGGATGATAGGCCCATATTCTGGTGGAGCTAGAAGGCTGTATGTTGGAAATCTCCATACCAATATAAAAGAAGATCGATCTCCGCCAGGTTTTTGGAGCATTTGGTCCTGTAGAACTGGTTCAGTTGCCTCATGA

Protein Analysis

352

Amino Acids

41.34

Weight (kDa)

9.27

Isoelectric Point (pI)

64.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 225 - 283 2.2e-09 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028987)

Species Orthologous Gene IDs
prunus_persica Prupe.8G227100_v2.0.a1
pyrus_communis pycom10g10870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 941
AccBSI CCGCTC 3 cut(s) 252, 373, 562
AccII CGCG 2 cut(s) 414, 723
AciI CCGC 6 cut(s) 250, 373, 412, 562, 721, 1004
AclWI GGATC 7 cut(s) 244, 285, 306, 371, 384, 617, 750
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 2 cut(s) 729, 804
AfiI CCNNNNNNNGG 4 cut(s) 436, 520, 839, 941
AgsI TTSAA 6 cut(s) 41, 96, 129, 183, 670, 753
AjiI CACGTC 1 cut(s) 455
AjnI CCWGG 2 cut(s) 916, 1006
AluBI AGCT 2 cut(s) 92, 950
AluI AGCT 2 cut(s) 92, 950
Alw26I GTCTC 3 cut(s) 258, 357, 387
AlwI GGATC 7 cut(s) 244, 285, 306, 371, 384, 617, 750
AlwNI CAGNNNCTG 2 cut(s) 620, 872
AoxI GGCC 1 cut(s) 931
ApeKI GCWGC 1 cut(s) 117
AsiSI GCGATCGC 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 1039
AspS9I GGNCC 5 cut(s) 427, 718, 914, 932, 1026
AsuC2I CCSGG 3 cut(s) 296, 431, 515
AsuHPI GGTGA 4 cut(s) 95, 239, 431, 868
AsuII TTCGAA 1 cut(s) 761
AvaII GGWCC 4 cut(s) 427, 718, 914, 1026
BamHI GGATCC 1 cut(s) 376
BbsI GAAGAC 2 cut(s) 321, 586
BbvI GCAGC 1 cut(s) 129
BccI CCATC 2 cut(s) 847, 871
BciT130I CCWGG 2 cut(s) 918, 1008
BcnI CCSGG 3 cut(s) 296, 431, 515
BcoDI GTCTC 3 cut(s) 258, 357, 387
BfaI CTAG 2 cut(s) 884, 951
BfmI CTRYAG 1 cut(s) 1030
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 5 cut(s) 296, 431, 515, 918, 1008
Bme18I GGWCC 4 cut(s) 427, 718, 914, 1026
BmgBI CACGTC 1 cut(s) 455
BmgT120I GGNCC 5 cut(s) 427, 718, 914, 932, 1026
BmiI GGNNCC 4 cut(s) 378, 428, 467, 512
BmrFI CCNGG 5 cut(s) 296, 431, 515, 918, 1008
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 321, 586
BplI GAGNNNNNCTC 4 cut(s) 155, 187, 686, 718
BpmI CTGGAG 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 3 cut(s) 296, 431, 515
Bsa29I ATCGAT 1 cut(s) 997
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 481
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 520, 839, 941
Bse1I ACTGG 3 cut(s) 848, 916, 1042
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 2 cut(s) 918, 1008
BseCI ATCGAT 1 cut(s) 997
BseGI GGATG 2 cut(s) 502, 930
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 4 cut(s) 436, 520, 839, 941
BseMII CTCAG 2 cut(s) 618, 864
BseNI ACTGG 3 cut(s) 848, 916, 1042
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 414, 723
Bsh1285I CGRYCG 2 cut(s) 385, 816
BshFI GGCC 1 cut(s) 933
BshVI ATCGAT 1 cut(s) 997
BsiEI CGRYCG 2 cut(s) 385, 816
BsiSI CCGG 3 cut(s) 295, 430, 514
BslFI GGGAC 3 cut(s) 184, 440, 619
BslI CCNNNNNNNGG 4 cut(s) 436, 520, 839, 941
BsmAI GTCTC 3 cut(s) 258, 357, 387
BsmFI GGGAC 3 cut(s) 184, 440, 619
BsnI GGCC 1 cut(s) 933
Bsp119I TTCGAA 1 cut(s) 761
BspACI CCGC 6 cut(s) 250, 373, 412, 562, 721, 1004
BspANI GGCC 1 cut(s) 933
BspCNI CTCAG 2 cut(s) 619, 865
BspDI ATCGAT 1 cut(s) 997
BspFNI CGCG 2 cut(s) 414, 723
BspHI TCATGA 2 cut(s) 142, 1052
BspLI GGNNCC 4 cut(s) 378, 428, 467, 512
BspPI GGATC 7 cut(s) 244, 285, 306, 371, 384, 617, 750
BspT104I TTCGAA 1 cut(s) 761
BsrBI CCGCTC 3 cut(s) 252, 373, 562
BsrI ACTGG 3 cut(s) 848, 916, 1042
BssNI GRCGYC 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 918, 1008
Bst4CI ACNGT 4 cut(s) 37, 73, 258, 646
Bst6I CTCTTC 1 cut(s) 840
BstACI GRCGYC 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 761
BstDEI CTNAG 2 cut(s) 627, 873
BstF5I GGATG 2 cut(s) 502, 930
BstFNI CGCG 2 cut(s) 414, 723
BstMAI GTCTC 3 cut(s) 258, 357, 387
BstMCI CGRYCG 2 cut(s) 385, 816
BstNI CCWGG 2 cut(s) 918, 1008
BstSCI CCNGG 5 cut(s) 294, 429, 513, 916, 1006
BstSFI CTRYAG 1 cut(s) 1030
BstUI CGCG 2 cut(s) 414, 723
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 2 cut(s) 321, 586
BstX2I RGATCY 2 cut(s) 236, 376
BstXI CCANNNNNNTGG 2 cut(s) 209, 1014
BstYI RGATCY 2 cut(s) 236, 376
Bsu15I ATCGAT 1 cut(s) 997
BsuRI GGCC 1 cut(s) 933
BsuTUI ATCGAT 1 cut(s) 997
BtgZI GCGATG 2 cut(s) 738, 809
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 2 cut(s) 502, 930
BtsIMutI CAGTG 2 cut(s) 855, 909
CaiI CAGNNNCTG 2 cut(s) 620, 872
CciI TCATGA 2 cut(s) 142, 1052
Cfr13I GGNCC 5 cut(s) 427, 718, 914, 932, 1026
ClaI ATCGAT 1 cut(s) 997
CseI GACGC 2 cut(s) 155, 470
CsiI ACCWGGT 1 cut(s) 916
Csp6I GTAC 2 cut(s) 728, 803
CviAII CATG 3 cut(s) 143, 203, 1053
CviQI GTAC 2 cut(s) 728, 803
DdeI CTNAG 2 cut(s) 627, 873
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
EciI GGCGGA 1 cut(s) 993
Eco47I GGWCC 4 cut(s) 427, 718, 914, 1026
EcoRII CCWGG 2 cut(s) 916, 1006
FaeI CATG 3 cut(s) 146, 206, 1056
FaqI GGGAC 3 cut(s) 184, 440, 619
FatI CATG 3 cut(s) 142, 202, 1052
FauI CCCGC 2 cut(s) 366, 555
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 2 cut(s) 509, 937
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 2 cut(s) 884, 951
GluI GCNGC 1 cut(s) 118
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 1 cut(s) 933
HapII CCGG 3 cut(s) 295, 430, 514
HgaI GACGC 2 cut(s) 155, 470
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 3 cut(s) 146, 206, 1056
HincII GTYRAC 2 cut(s) 845, 894
HindII GTYRAC 2 cut(s) 845, 894
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 197, 617, 880
HpaII CCGG 3 cut(s) 295, 430, 514
HphI GGTGA 4 cut(s) 95, 239, 431, 868
Hpy166II GTNNAC 2 cut(s) 845, 894
Hpy188I TCNGA 4 cut(s) 475, 622, 660, 868
Hpy8I GTNNAC 2 cut(s) 845, 894
Hpy99I CGWCG 1 cut(s) 486
HpyAV CCTTC 8 cut(s) 142, 430, 541, 589, 596, 664, 757, 948
HpyCH4III ACNGT 4 cut(s) 37, 73, 258, 646
HpyCH4IV ACGT 5 cut(s) 208, 406, 454, 730, 757
HpyF3I CTNAG 2 cut(s) 627, 873
HpySE526I ACGT 5 cut(s) 208, 406, 454, 730, 757
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 3 cut(s) 146, 206, 1056
LmnI GCTCC 7 cut(s) 163, 465, 510, 523, 559, 947, 1017
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 1 cut(s) 781
MabI ACCWGGT 1 cut(s) 916
MaeI CTAG 2 cut(s) 884, 951
MaeII ACGT 5 cut(s) 208, 406, 454, 730, 757
MaeIII GTNAC 6 cut(s) 152, 167, 245, 407, 419, 907
MbiI CCGCTC 3 cut(s) 252, 373, 562
MboII GAAGA 8 cut(s) 231, 326, 591, 611, 691, 827, 889, 1004
MflI RGATCY 2 cut(s) 236, 376
MluCI AATT 1 cut(s) 748
MlyI GAGTC 2 cut(s) 206, 626
MmeI TCCRAC 1 cut(s) 946
MroXI GAANNNNTTC 1 cut(s) 1039
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 3 cut(s) 295, 430, 514
MspR9I CCNGG 5 cut(s) 296, 431, 515, 918, 1008
MvaI CCWGG 2 cut(s) 918, 1008
MvnI CGCG 2 cut(s) 414, 723
NciI CCSGG 3 cut(s) 296, 431, 515
NlaIII CATG 3 cut(s) 146, 206, 1056
NlaIV GGNNCC 4 cut(s) 378, 428, 467, 512
NmuCI GTSAC 6 cut(s) 152, 167, 245, 407, 419, 907
NspV TTCGAA 1 cut(s) 761
PagI TCATGA 2 cut(s) 142, 1052
PdmI GAANNNNTTC 1 cut(s) 1039
PfeI GAWTC 1 cut(s) 880
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 1 cut(s) 119
Ple19I CGATCG 2 cut(s) 385, 816
PleI GAGTC 2 cut(s) 205, 625
PpsI GAGTC 2 cut(s) 205, 625
Psp6I CCWGG 2 cut(s) 916, 1006
PspGI CCWGG 2 cut(s) 916, 1006
PspN4I GGNNCC 4 cut(s) 378, 428, 467, 512
PspPI GGNCC 5 cut(s) 427, 718, 914, 932, 1026
PsrI GAACNNNNNNTAC 2 cut(s) 1024, 1056
PstNI CAGNNNCTG 2 cut(s) 620, 872
PsuI RGATCY 2 cut(s) 236, 376
PvuI CGATCG 2 cut(s) 385, 816
RgaI GCGATCGC 1 cut(s) 816
RsaI GTAC 2 cut(s) 729, 804
RsaNI GTAC 2 cut(s) 728, 803
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 1 cut(s) 118
Sau96I GGNCC 5 cut(s) 427, 718, 914, 932, 1026
SchI GAGTC 2 cut(s) 206, 626
ScrFI CCNGG 5 cut(s) 296, 431, 515, 918, 1008
SexAI ACCWGGT 1 cut(s) 916
SfaAI GCGATCGC 1 cut(s) 816
SfaNI GCATC 1 cut(s) 781
SfcI CTRYAG 1 cut(s) 1030
SfuI TTCGAA 1 cut(s) 761
SgfI GCGATCGC 1 cut(s) 816
SinI GGWCC 4 cut(s) 427, 718, 914, 1026
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 1 cut(s) 748
SsiI CCGC 6 cut(s) 250, 373, 412, 562, 721, 1004
SspMI CTAG 2 cut(s) 884, 951
StyD4I CCNGG 5 cut(s) 294, 429, 513, 916, 1006
TaaI ACNGT 4 cut(s) 37, 73, 258, 646
TaiI ACGT 5 cut(s) 211, 409, 457, 733, 760
TaqI TCGA 3 cut(s) 484, 761, 997
TasI AATT 1 cut(s) 748
TfiI GAWTC 1 cut(s) 880
TscAI CASTG 2 cut(s) 855, 916
TseFI GTSAC 6 cut(s) 152, 167, 245, 407, 419, 907
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 6 cut(s) 152, 167, 245, 407, 419, 907
TspDTI ATGAA 3 cut(s) 219, 513, 693
TspRI CASTG 2 cut(s) 855, 916
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 4 cut(s) 427, 718, 914, 1026
XmnI GAANNNNTTC 1 cut(s) 1039
XspI CTAG 2 cut(s) 884, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.