pycom10g11410

Lysine histidine transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014659
Physical Location & Seq
Reverse (-)
14960234 .. 14961616
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGTCTGAAACAGGAAGTGATGAGATAACCCCAGTCCCAATGACAACGGGGCTGCCTACGCCACCTACAGAAGATCCTCCAGCATCTATGTCTCGAGAAGCATCTGTGGCTTGGGTACAACCACTGCTGATCCCGGCTTCAACCGCCACCACCGGTGGTGGTGACCAGATAACACAAAAAACCCCGAAAACTTTAACCCCAAAATCTCGTACTCCACGGTTCATGACACCAATAGGGAGCCCCGTTAGGAGGGCTTTCCACCTCACAAGGCTTGACCCTCAAGATGCTTGGCTTCCAATCACTGAATCTAGGAACGGTAACGCTTACTATGCTGCCTTCCACACTCTTTGTTCTGGTATTGGAATTCAATCTCTTGTGCTTCCTGTGGCATTTCCTTATCTTGGGTGGACATGGGGTGTTATATGTATGACTTTGGCATTCATATGGCAACTTTACACTTTATACTTGCTGGTCCACCTTCATGAATCTCCTGAAACTGGCATCCGTTATTGCAGATACATTCAACTTTGCAATGCAACTTTTGGTGAGAAGTTATCGAAGTTCTTGGCCTTATTCCCGATTTTGTACCTATCGGGCGGCACGTGCGTGGCTCTGATTGTCCTCGGAGGAGCAACATCAAAGTCGTTCTTCCAAATTGTGTGTGGAGCTACATGCACTGCAAAGCCATTGACACCAGCAGAGTGGTACTTGGTGTTTACATGCGCCGCAGTGATTCTGTCGCAGCTGCCAAACTTGAACTCCATTGCCGGAGTGTCTCTTGTTGGTGCCATCACAGCTATTGGCTACTGCACAATCATATGGGTTGTGTCTGTGGATAAGGGTAGACTTCCTCATGTGTCTTATGATCGATCCCTTGAAATCCAACAAAAACTTCATTCACTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

303

Amino Acids

32.89

Weight (kDa)

8.35

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 105 - 300 3.6e-26 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014659)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g16054
malus_domestica MD05G1129900.v1.1 MD10G1132900.v1.1
prunus_persica Prupe.8G173800_v2.0.a1
pyrus_communis pycom05g12670 pycom10g11410
rosa_chinensis RchiOBHm_Chr6g0279731
rosa_laevigata RLG00000013126
rosa_multiflora Rmu_sc0000685.1_g000019 Rmu_sc0001719.1_g000013
rosa_roxburghii Rroxscaffold_7G00188710
rosa_rugosa Rorug06G0127400
rosa_samantha Rh6AG235700 Rh6BG240000 Rh6CG242000 Rh6DG233600
rosa_wichuraiana Rw6G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 785
AccI GTMKAC 1 cut(s) 844
AciI CCGC 3 cut(s) 144, 597, 726
AclWI GGATC 3 cut(s) 68, 124, 864
AcsI RAATTY 1 cut(s) 363
AcvI CACGTG 1 cut(s) 603
AfaI GTAC 4 cut(s) 117, 211, 587, 707
AfiI CCNNNNNNNGG 3 cut(s) 249, 401, 497
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 5 cut(s) 141, 368, 524, 757, 878
AjuI GAANNNNNNNTTGG 2 cut(s) 876, 908
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 3 cut(s) 668, 745, 797
AluI AGCT 3 cut(s) 668, 745, 797
Alw26I GTCTC 2 cut(s) 96, 780
AlwI GGATC 3 cut(s) 68, 124, 864
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 4 cut(s) 52, 332, 742, 745
ApoI RAATTY 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 152
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 1 cut(s) 472
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 173, 557
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 1 cut(s) 472
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 603
BbvI GCAGC 4 cut(s) 39, 319, 732, 754
BccI CCATC 1 cut(s) 797
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 96, 780
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 6 cut(s) 53, 333, 598, 726, 743, 746
BlsI GCNGC 6 cut(s) 54, 334, 599, 727, 744, 747
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 239, 787
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 4 cut(s) 92, 110, 274, 510
BmuI ACTGGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 868
BsaAI YACGTR 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 215, 622
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 743, 773
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 401, 497
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 32, 502
Bse3DI GCAATG 2 cut(s) 538, 762
BseCI ATCGAT 1 cut(s) 868
BseDI CCNNGG 2 cut(s) 215, 622
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 3 cut(s) 249, 401, 497
BseMI GCAATG 2 cut(s) 538, 762
BseNI ACTGG 2 cut(s) 32, 502
BseRI GAGGAG 1 cut(s) 642
BseXI GCAGC 4 cut(s) 39, 319, 732, 754
BsgI GTGCAG 1 cut(s) 793
BshFI GGCC 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 785
BshTI ACCGGT 1 cut(s) 152
BshVI ATCGAT 1 cut(s) 868
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 3 cut(s) 134, 153, 768
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 3 cut(s) 249, 401, 497
BsmAI GTCTC 2 cut(s) 96, 780
BsmFI GGGAC 1 cut(s) 20
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 1 cut(s) 569
BsoBI CYCGRG 1 cut(s) 93
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 4 cut(s) 73, 129, 865, 869
BspACI CCGC 3 cut(s) 144, 597, 726
BspANI GGCC 1 cut(s) 569
BspDI ATCGAT 1 cut(s) 868
BspHI TCATGA 2 cut(s) 222, 481
BspLI GGNNCC 2 cut(s) 239, 787
BspPI GGATC 3 cut(s) 68, 124, 864
BspT107I GGYRCC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 538, 762
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 2 cut(s) 32, 502
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 2 cut(s) 215, 622
BssMI GATC 4 cut(s) 73, 129, 865, 869
Bst4CI ACNGT 2 cut(s) 219, 317
BstBAI YACGTR 1 cut(s) 603
BstDSI CCRYGG 1 cut(s) 215
BstEII GGTNACC 1 cut(s) 161
BstF5I GGATG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 4 cut(s) 76, 132, 868, 872
BstMAI GTCTC 2 cut(s) 96, 780
BstMBI GATC 4 cut(s) 73, 129, 865, 869
BstMWI GCNNNNNNNGC 6 cut(s) 58, 107, 143, 329, 603, 794
BstNSI RCATGY 2 cut(s) 675, 723
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 132
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 39, 319, 732, 754
BstX2I RGATCY 1 cut(s) 73
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 1 cut(s) 73
Bsu15I ATCGAT 1 cut(s) 868
BsuRI GGCC 1 cut(s) 569
BsuTUI ATCGAT 1 cut(s) 868
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 501
BtsI GCAGTG 3 cut(s) 122, 675, 735
BtsIMutI CAGTG 4 cut(s) 122, 300, 675, 735
CciI TCATGA 2 cut(s) 222, 481
CfoI GCGC 1 cut(s) 725
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 472
ClaI ATCGAT 1 cut(s) 868
Csp6I GTAC 4 cut(s) 116, 210, 586, 706
CspAI ACCGGT 1 cut(s) 152
CspCI CAANNNNNGTGG 2 cut(s) 329, 364
CviAII CATG 6 cut(s) 223, 411, 482, 672, 720, 854
CviQI GTAC 4 cut(s) 116, 210, 586, 706
DpnI GATC 4 cut(s) 75, 131, 867, 871
DpnII GATC 4 cut(s) 73, 129, 865, 869
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 472
Eco72I CACGTG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 6 cut(s) 226, 414, 485, 675, 723, 857
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 222, 410, 481, 671, 719, 853
FauNDI CATATG 2 cut(s) 443, 818
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 6 cut(s) 53, 333, 598, 726, 743, 746
FokI GGATG 1 cut(s) 488
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 6 cut(s) 53, 333, 598, 726, 743, 746
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 724
GluI GCNGC 6 cut(s) 53, 333, 598, 726, 743, 746
GsuI CTGGAG 1 cut(s) 63
HaeIII GGCC 1 cut(s) 569
HapII CCGG 3 cut(s) 134, 153, 768
HhaI GCGC 1 cut(s) 725
Hin1II CATG 6 cut(s) 226, 414, 485, 675, 723, 857
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HinfI GANTC 3 cut(s) 305, 485, 733
HpaII CCGG 3 cut(s) 134, 153, 768
HphI GGTGA 2 cut(s) 173, 557
Hpy166II GTNNAC 4 cut(s) 408, 475, 717, 845
Hpy188I TCNGA 3 cut(s) 7, 615, 626
Hpy188III TCNNGA 7 cut(s) 93, 95, 223, 281, 482, 491, 577
Hpy8I GTNNAC 4 cut(s) 408, 475, 717, 845
HpyAV CCTTC 2 cut(s) 346, 488
HpyCH4III ACNGT 2 cut(s) 219, 317
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 6 cut(s) 513, 531, 536, 675, 680, 810
HpyF10VI GCNNNNNNNGC 6 cut(s) 58, 107, 143, 329, 603, 794
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 6 cut(s) 226, 414, 485, 675, 723, 857
HspAI GCGC 1 cut(s) 723
Kzo9I GATC 4 cut(s) 73, 129, 865, 869
LmnI GCTCC 3 cut(s) 237, 629, 665
Lsp1109I GCAGC 4 cut(s) 39, 319, 732, 754
LweI GCATC 4 cut(s) 92, 110, 274, 510
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 2 cut(s) 161, 317
MalI GATC 4 cut(s) 75, 131, 867, 871
MboI GATC 4 cut(s) 73, 129, 865, 869
MboII GAAGA 2 cut(s) 83, 640
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 2 cut(s) 363, 654
MmeI TCCRAC 1 cut(s) 907
MnlI CCTC 7 cut(s) 87, 243, 272, 288, 620, 632, 861
MseI TTAA 1 cut(s) 194
MslI CAYNNNNRTG 3 cut(s) 442, 480, 605
MspA1I CMGCKG 1 cut(s) 745
MspI CCGG 3 cut(s) 134, 153, 768
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 437
MwoI GCNNNNNNNGC 6 cut(s) 58, 107, 143, 329, 603, 794
NciI CCSGG 1 cut(s) 134
NdeI CATATG 2 cut(s) 443, 818
NdeII GATC 4 cut(s) 73, 129, 865, 869
NlaIII CATG 6 cut(s) 226, 414, 485, 675, 723, 857
NlaIV GGNNCC 2 cut(s) 239, 787
NmuCI GTSAC 1 cut(s) 161
NspI RCATGY 2 cut(s) 675, 723
OliI CACNNNNGTG 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 93
PagI TCATGA 2 cut(s) 222, 481
PcsI WCGNNNNNNNCGW 1 cut(s) 599
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 305, 485, 733
PinAI ACCGGT 1 cut(s) 152
PkrI GCNGC 6 cut(s) 54, 334, 599, 727, 744, 747
PmaCI CACGTG 1 cut(s) 603
PmlI CACGTG 1 cut(s) 603
Ppu21I YACGTR 1 cut(s) 603
PspCI CACGTG 1 cut(s) 603
PspEI GGTNACC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 239, 787
PspPI GGNCC 1 cut(s) 472
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 745
RsaI GTAC 4 cut(s) 117, 211, 587, 707
RsaNI GTAC 4 cut(s) 116, 210, 586, 706
RseI CAYNNNNRTG 3 cut(s) 442, 480, 605
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 6 cut(s) 53, 333, 598, 726, 743, 746
Sau3AI GATC 4 cut(s) 73, 129, 865, 869
Sau96I GGNCC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 242
SetI ASST 8 cut(s) 67, 264, 480, 591, 605, 670, 747, 799
SfaNI GCATC 4 cut(s) 92, 110, 274, 510
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 93
SgrAI CRCCGGYG 1 cut(s) 152
SinI GGWCC 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 93
SmiMI CAYNNNNRTG 3 cut(s) 442, 480, 605
SmlI CTYRAG 2 cut(s) 93, 279
SmoI CTYRAG 2 cut(s) 93, 279
Sse9I AATT 2 cut(s) 363, 654
SsiI CCGC 3 cut(s) 144, 597, 726
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 132
TaaI ACNGT 2 cut(s) 219, 317
TaiI ACGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 94, 557, 868
TasI AATT 2 cut(s) 363, 654
TauI GCSGC 2 cut(s) 600, 728
TfiI GAWTC 3 cut(s) 305, 485, 733
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 4 cut(s) 129, 307, 682, 735
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 4 cut(s) 52, 332, 742, 745
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 5 cut(s) 211, 430, 470, 498, 884
TspGWI ACGGA 1 cut(s) 494
TspRI CASTG 4 cut(s) 129, 307, 682, 735
VpaK11BI GGWCC 1 cut(s) 472
XapI RAATTY 1 cut(s) 363
XceI RCATGY 2 cut(s) 675, 723
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XhoI CTCGAG 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 844
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.