Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029273

Physical Location & Seq

Genomic Coordinates Forward (+)

15724280 .. 15725597

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTGGCTAGATCTACATGGGATGAGCTATCACCGAAATGGTTACAAGAGAATCATAAAGGTCGACAATTTATTCGGCCAGAAGTGTGCAGAACATATAATTTTGGAGAACATGGTTCTAGTCTGGGACAGTTTTTCAAACAATATCTTGAGCCAATCAAGCTGAATGATGTCCCGGTTGACTGGAAATCAATGGATTTGAGCTACCTGATGGAGGACAAGTATATAAAACACTTTGCTGACATTGTGAAAAAAGCTAAACCTATCCGTGGATCTGATCTTGTACTAAAGACTTCGAATACATTGCTGGCCAGTTTGGTATTTTTGAAGAGTGGAAGGTCATTTTCCTTTTTATTGTGCAACTTTCCTTCAATCATCATTGAAATTAGGAATAATGCATTTGATTTTATGACTGGAGAATCTTCGATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006464 GO:0006486 GO:0006491 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009987 GO:0012505 GO:0016262 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:0140103 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

GNT-I

Protein Analysis

145

Amino Acids

16.7

Weight (kDa)

8.89

Isoelectric Point (pI)

30.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GNT-I	PF03071	1 - 101	1.1e-36	GNT-I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029273)

Species	Orthologous Gene IDs
pyrus_communis	pycom05g13390 pycom10g12130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	2 cut(s)	77, 309
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	2 cut(s)	214, 269
AgsI	TTSAA	5 cut(s)	139, 328, 372, 383, 431
AluBI	AGCT	4 cut(s)	28, 163, 204, 257
AluI	AGCT	4 cut(s)	28, 163, 204, 257
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	2 cut(s)	77, 309
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	24
AsuII	TTCGAA	1 cut(s)	296
BalI	TGGCCA	1 cut(s)	311
BccI	CCATC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BcnI	CCSGG	1 cut(s)	176
BfaI	CTAG	2 cut(s)	9, 120
BglII	AGATCT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 269
Bse1I	ACTGG	3 cut(s)	188, 312, 418
Bse3DI	GCAATG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	2 cut(s)	214, 269
BseMI	GCAATG	1 cut(s)	302
BseNI	ACTGG	3 cut(s)	188, 312, 418
BsgI	GTGCAG	1 cut(s)	109
BshFI	GGCC	2 cut(s)	79, 311
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	141, 158
BslI	CCNNNNNNNGG	2 cut(s)	214, 269
BsmFI	GGGAC	2 cut(s)	141, 158
BsnI	GGCC	2 cut(s)	79, 311
Bsp119I	TTCGAA	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	11, 272, 277
BspANI	GGCC	2 cut(s)	79, 311
BspPI	GGATC	1 cut(s)	280
BspT104I	TTCGAA	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	3 cut(s)	188, 312, 418
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	3 cut(s)	11, 272, 277
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	6, 309
BstDSI	CCRYGG	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	14, 275, 280
BstMBI	GATC	3 cut(s)	11, 272, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	11, 272
BstYI	RGATCY	2 cut(s)	11, 272
BsuRI	GGCC	2 cut(s)	79, 311
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	6, 309
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	2 cut(s)	18, 113
CviJI	RGCY	8 cut(s)	8, 28, 79, 154, 163, 204, 257, 311
CviKI_1	RGCY	8 cut(s)	8, 28, 79, 154, 163, 204, 257, 311
CviQI	GTAC	1 cut(s)	284
DpnI	GATC	3 cut(s)	13, 274, 279
DpnII	GATC	3 cut(s)	11, 272, 277
EaeI	YGGCCR	2 cut(s)	77, 309
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	2 cut(s)	21, 116
FaiI	YATR	8 cut(s)	19, 57, 97, 99, 114, 225, 227, 410
FaqI	GGGAC	2 cut(s)	141, 158
FatI	CATG	2 cut(s)	17, 112
FblI	GTMKAC	1 cut(s)	64
FokI	GGATG	1 cut(s)	35
FspBI	CTAG	2 cut(s)	9, 120
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	79, 311
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	2 cut(s)	21, 116
HincII	GTYRAC	2 cut(s)	65, 181
HindII	GTYRAC	2 cut(s)	65, 181
HinfI	GANTC	3 cut(s)	52, 419, 427
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	2 cut(s)	65, 181
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	65, 181
HpyAV	CCTTC	2 cut(s)	330, 378
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	90, 360, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	21, 116
Kzo9I	GATC	3 cut(s)	11, 272, 277
LpnPI	CCDG	8 cut(s)	93, 110, 169, 189, 221, 293, 325, 399
MaeI	CTAG	2 cut(s)	9, 120
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	3 cut(s)	13, 274, 279
MboI	GATC	3 cut(s)	11, 272, 277
MboII	GAAGA	2 cut(s)	340, 414
MflI	RGATCY	2 cut(s)	11, 272
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	3 cut(s)	68, 100, 384
MluNI	TGGCCA	1 cut(s)	311
MnlI	CCTC	1 cut(s)	208
Mox20I	TGGCCA	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	37
Msp20I	TGGCCA	1 cut(s)	311
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	160
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	3 cut(s)	11, 272, 277
NlaIII	CATG	2 cut(s)	21, 116
NsiI	ATGCAT	1 cut(s)	400
NspV	TTCGAA	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	52, 419, 427
PsuI	RGATCY	2 cut(s)	11, 272
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	11, 272, 277
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	8 cut(s)	30, 64, 165, 206, 210, 259, 265, 341
SfuI	TTCGAA	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	68, 100, 384
SspMI	CTAG	2 cut(s)	9, 120
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	132
TaqI	TCGA	3 cut(s)	64, 296, 425
TasI	AATT	3 cut(s)	68, 100, 384
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	3 cut(s)	52, 419, 427
TspGWI	ACGGA	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	2 cut(s)	9, 120
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.