Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029380

Physical Location & Seq

Genomic Coordinates Forward (+)

15740515 .. 15743349

Gene Structure 2835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGATCTACTTCGAACTTTCAGGAGAAAACATCGTGAGCACGCTAGGCCACACGGTGCTGATCATCTGGTTTTTTGTAGTTCTAGTGATCAACTCAAGCTACACAGCTAACCTGACATCAATGCTCATAGTACAACAATTATCATCCCCCATCACCAGCATCGATACCTTGATAACTAGCACAGAACCTATAGGATTCCAAATCGGATCTTTTGCTCAGAGCTATTTCGTTGAGCAGCTCAACATCCCTAAGACTAGACTAGTTCCTCTCGGCTCGCCAGAAGCTTATGCAACCGCGCTTAAGGACAAAACTGTTGCTGCTGTGGTTGATGAAAGAGCATACATAGAACTCTTCCTCTCAGAAAATTGCAAGTTCTCAATTAGGGGGTCGGAGTTCACCAAAAGTGGGTGGGGATTTGCATTTCCAAGAGACTCTCCTTTGGCAATTGACATGTCAACTGCCGTACTCACTCTCTCTGAGAATGGTGATCTCCAGATAATTTATAACAAATGGCTCTCCAGAAAGATATGTGCTTCAGAGACCTCCAACATCGTGTCGGACCAGCTTCAACTACAAAGCTTTTGGGGGCTATTCCTTATCGCGGGCGCTGTATATTTTATTGCTCTACTCATTCACTTGTTCTCCATGTTACGCCAGTTCAAACGACATACCCCCAAAGCTGAAGATCAGTCTGAGCCTTCGAGCCACGGAAACATCAACTCTCGTTCTACCTTAACACATCTCCTCACGTTCTTGTCCTTCGTCGACGAAAAGAGACACGAAATCAAAGAGAAAATTAGATATACGGTAAATATACACCATAGTTATGATATACGAAAACAAATTAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

285

Amino Acids

32.11

Weight (kDa)

6.71

Isoelectric Point (pI)

51.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	8 - 203	3.6e-20	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0029380)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g12170
rosa_multiflora	Rmu_sc0003368.1_g000038

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	765
AccII	CGCG	2 cut(s)	296, 602
AciI	CCGC	2 cut(s)	294, 602
AclWI	GGATC	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	519, 702
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	2 cut(s)	132, 465
AfiI	CCNNNNNNNGG	2 cut(s)	405, 601
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	2 cut(s)	569, 661
AhlI	ACTAGT	1 cut(s)	259
AluBI	AGCT	8 cut(s)	99, 107, 222, 238, 284, 565, 579, 680
AluI	AGCT	8 cut(s)	99, 107, 222, 238, 284, 565, 579, 680
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	3 cut(s)	423, 533, 769
AlwI	GGATC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	235, 317
AseI	ATTAAT	1 cut(s)	846
AspLEI	GCGC	2 cut(s)	298, 608
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	145, 388, 497
AsuII	TTCGAA	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	247, 304
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	446
BclI	TGATCA	2 cut(s)	60, 87
BcoDI	GTCTC	3 cut(s)	423, 533, 769
BcuI	ACTAGT	1 cut(s)	259
BfaI	CTAG	5 cut(s)	44, 83, 177, 255, 260
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	609
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	236, 318
BlsI	GCNGC	2 cut(s)	237, 319
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmsI	GCATC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	476, 502
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	706
BsaXI	ACNNNNNCTCC	2 cut(s)	626, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 601
Bse1I	ACTGG	1 cut(s)	655
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	2 cut(s)	143, 243
BseLI	CCNNNNNNNGG	2 cut(s)	405, 601
BseMII	CTCAG	4 cut(s)	230, 372, 468, 684
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	2 cut(s)	247, 304
Bsh1236I	CGCG	2 cut(s)	296, 602
BshFI	GGCC	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	405, 601
BsmAI	GTCTC	3 cut(s)	423, 533, 769
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
BspACI	CCGC	2 cut(s)	294, 602
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	4 cut(s)	229, 371, 469, 685
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	296, 602
BspPI	GGATC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	299
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	655
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
Bst4CI	ACNGT	3 cut(s)	55, 313, 808
Bst6I	CTCTTC	1 cut(s)	356
BstAFI	CTTAAG	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	41, 275, 604
BstDEI	CTNAG	5 cut(s)	216, 249, 358, 477, 693
BstDSI	CCRYGG	1 cut(s)	706
BstF5I	GGATG	2 cut(s)	143, 243
BstFNI	CGCG	2 cut(s)	296, 602
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	298, 608
BstKTI	GATC	6 cut(s)	6, 63, 90, 209, 490, 688
BstMAI	GTCTC	3 cut(s)	423, 533, 769
BstMBI	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	454
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	2 cut(s)	296, 602
BstV1I	GCAGC	2 cut(s)	247, 304
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	48
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	706
BtsCI	GGATG	2 cut(s)	143, 243
Cac8I	GCNNGC	3 cut(s)	41, 275, 604
CfoI	GCGC	2 cut(s)	298, 608
Cfr13I	GGNCC	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	131, 464
CviAII	CATG	2 cut(s)	451, 646
CviQI	GTAC	2 cut(s)	131, 464
DdeI	CTNAG	5 cut(s)	216, 249, 358, 477, 693
DpnI	GATC	6 cut(s)	5, 62, 89, 208, 489, 687
DpnII	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
DraIII	CACNNNGTG	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	356
EarI	CTCTTC	1 cut(s)	356
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	519, 702
FaeI	CATG	2 cut(s)	454, 649
FatI	CATG	2 cut(s)	450, 645
FauI	CCCGC	1 cut(s)	595
FbaI	TGATCA	2 cut(s)	60, 87
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	236, 318
FokI	GGATG	2 cut(s)	130, 230
Fsp4HI	GCNGC	2 cut(s)	236, 318
FspBI	CTAG	5 cut(s)	44, 83, 177, 255, 260
GlaI	GCGC	2 cut(s)	297, 607
GluI	GCNGC	2 cut(s)	236, 318
GsuI	CTGGAG	2 cut(s)	476, 502
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	1 cut(s)	48
HhaI	GCGC	2 cut(s)	298, 608
Hin1II	CATG	2 cut(s)	454, 649
Hin6I	GCGC	2 cut(s)	296, 606
HinP1I	GCGC	2 cut(s)	296, 606
HincII	GTYRAC	2 cut(s)	456, 766
HindII	GTYRAC	2 cut(s)	456, 766
HindIII	AAGCTT	2 cut(s)	282, 577
HinfI	GANTC	2 cut(s)	195, 431
HphI	GGTGA	3 cut(s)	145, 388, 497
Hpy166II	GTNNAC	3 cut(s)	396, 456, 766
Hpy188I	TCNGA	8 cut(s)	206, 219, 361, 391, 478, 538, 559, 694
Hpy188III	TCNNGA	4 cut(s)	21, 34, 493, 519
Hpy8I	GTNNAC	3 cut(s)	396, 456, 766
Hpy99I	CGWCG	2 cut(s)	767, 770
HpyAV	CCTTC	2 cut(s)	708, 769
HpyCH4III	ACNGT	3 cut(s)	55, 313, 808
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	3 cut(s)	290, 369, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	5 cut(s)	216, 249, 358, 477, 693
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	2 cut(s)	454, 649
HspAI	GCGC	2 cut(s)	296, 606
Ksp22I	TGATCA	2 cut(s)	60, 87
Kzo9I	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
LpnPI	CCDG	9 cut(s)	6, 52, 125, 169, 291, 506, 532, 575, 668
Lsp1109I	GCAGC	2 cut(s)	247, 304
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	5 cut(s)	44, 83, 177, 255, 260
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	1 cut(s)	648
MalI	GATC	6 cut(s)	5, 62, 89, 208, 489, 687
MboI	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
MboII	GAAGA	2 cut(s)	343, 695
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	7 cut(s)	137, 364, 378, 444, 498, 795, 843
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	3 cut(s)	369, 537, 570
MnlI	CCTC	4 cut(s)	276, 365, 553, 755
MseI	TTAA	3 cut(s)	300, 734, 846
MslI	CAYNNNNRTG	1 cut(s)	825
MspCI	CTTAAG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	296, 602
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
NlaIII	CATG	2 cut(s)	454, 649
NmeAIII	GCCGAG	1 cut(s)	249
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	12
PciI	ACATGT	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	237, 319
PleI	GAGTC	1 cut(s)	425
PpsI	GAGTC	1 cut(s)	425
PscI	ACATGT	1 cut(s)	450
PshBI	ATTAAT	1 cut(s)	846
PsiI	TTATAA	1 cut(s)	504
PspPI	GGNCC	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	132, 465
RsaNI	GTAC	2 cut(s)	131, 464
RseI	CAYNNNNRTG	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	300, 734, 846
SatI	GCNGC	2 cut(s)	236, 318
Sau3AI	GATC	6 cut(s)	3, 60, 87, 206, 487, 685
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	189
SfuI	TTCGAA	1 cut(s)	12
SgrDI	CGTCGACG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	2 cut(s)	94, 299
SmoI	CTYRAG	2 cut(s)	94, 299
SpeI	ACTAGT	1 cut(s)	259
Sse9I	AATT	7 cut(s)	137, 364, 378, 444, 498, 795, 843
SsiI	CCGC	2 cut(s)	294, 602
SspMI	CTAG	5 cut(s)	44, 83, 177, 255, 260
TaaI	ACNGT	3 cut(s)	55, 313, 808
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	4 cut(s)	12, 162, 701, 765
TasI	AATT	7 cut(s)	137, 364, 378, 444, 498, 795, 843
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	3 cut(s)	300, 734, 846
Tru9I	TTAA	3 cut(s)	300, 734, 846
TseI	GCWGC	2 cut(s)	235, 317
TspDTI	ATGAA	1 cut(s)	345
TspGWI	ACGGA	1 cut(s)	723
Vha464I	CTTAAG	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	559
VspI	ATTAAT	1 cut(s)	846
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	765
XspI	CTAG	5 cut(s)	44, 83, 177, 255, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.