Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028699

Physical Location & Seq

Genomic Coordinates Reverse (-)

19478571 .. 19479114

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCACAACGACTGCAGAGACAACCCAAGAAAGATGCAGAGGTCCAATAGTCATGGTACTTGTCCCCAAACGTCCGATCTCAGCTATTCTACACGAAAGGGATATGACAAGAGTGGCTTGGTTAAATCACAGTTCCAAGCAAACAAAAGGACACCACGACCTAAGGTATATCCGAGAAAAGGAAATGTTGAAGTTGCAGATCCAAAGGCAAACAAATTATCAACTGGCACATATTCGGATCTGAAAGGCGTACACTCATCTGTGCTGAGATTTTGCTGGATCTGCAGCGTGTGTGAACGGATATGGAATGCATGTATCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

9.73

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028699)

Species	Orthologous Gene IDs
malus_domestica	MD04G1092900.v1.1
pyrus_communis	pycom10g16290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	194, 246, 287
AfaI	GTAC	2 cut(s)	58, 252
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	1 cut(s)	84
AluI	AGCT	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	194, 246, 287
ApeKI	GCWGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	42
AxyI	CCTNAGG	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	13, 283
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	42
BmgT120I	GGNCC	1 cut(s)	42
BmsI	GCATC	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	229
Bse21I	CCTNAGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	2 cut(s)	94, 257
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	76, 199, 238, 279
BspCNI	CTCAG	2 cut(s)	93, 258
BspMAI	CTGCAG	2 cut(s)	17, 287
BspPI	GGATC	3 cut(s)	194, 246, 287
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	76, 199, 238, 279
Bst4CI	ACNGT	1 cut(s)	132
BstDEI	CTNAG	3 cut(s)	80, 162, 266
BstKTI	GATC	4 cut(s)	79, 202, 241, 282
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	76, 199, 238, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	315
BstSFI	CTRYAG	2 cut(s)	13, 283
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	3 cut(s)	199, 238, 279
BstYI	RGATCY	3 cut(s)	199, 238, 279
Bsu36I	CCTNAGG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	57, 251
CviAII	CATG	2 cut(s)	53, 312
CviJI	RGCY	2 cut(s)	84, 117
CviKI_1	RGCY	2 cut(s)	84, 117
CviQI	GTAC	2 cut(s)	57, 251
DdeI	CTNAG	3 cut(s)	80, 162, 266
DpnI	GATC	4 cut(s)	78, 201, 240, 281
DpnII	GATC	4 cut(s)	76, 199, 238, 279
Eco47I	GGWCC	1 cut(s)	42
Eco81I	CCTNAGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	313
FaeI	CATG	2 cut(s)	56, 315
FaiI	YATR	6 cut(s)	54, 105, 169, 232, 304, 313
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	2 cut(s)	52, 311
Fnu4HI	GCNGC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	56, 315
Hpy166II	GTNNAC	2 cut(s)	253, 296
Hpy188I	TCNGA	4 cut(s)	76, 174, 238, 243
Hpy8I	GTNNAC	2 cut(s)	253, 296
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	6 cut(s)	4, 15, 37, 197, 285, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	3 cut(s)	80, 162, 266
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	56, 315
Kzo9I	GATC	4 cut(s)	76, 199, 238, 279
LpnPI	CCDG	2 cut(s)	210, 262
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	24
MaeII	ACGT	1 cut(s)	71
MalI	GATC	4 cut(s)	78, 201, 240, 281
MboI	GATC	4 cut(s)	76, 199, 238, 279
MflI	RGATCY	3 cut(s)	199, 238, 279
MluCI	AATT	1 cut(s)	215
MnlI	CCTC	1 cut(s)	33
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeII	GATC	4 cut(s)	76, 199, 238, 279
NlaIII	CATG	2 cut(s)	56, 315
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	1 cut(s)	315
PctI	GAATGC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	42
PstI	CTGCAG	2 cut(s)	17, 287
PsuI	RGATCY	3 cut(s)	199, 238, 279
RsaI	GTAC	2 cut(s)	58, 252
RsaNI	GTAC	2 cut(s)	57, 251
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	4 cut(s)	76, 199, 238, 279
Sau96I	GGNCC	1 cut(s)	42
SetI	ASST	5 cut(s)	44, 74, 86, 163, 168
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	2 cut(s)	13, 283
SinI	GGWCC	1 cut(s)	42
Sse9I	AATT	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	1 cut(s)	74
TasI	AATT	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseI	GCWGC	1 cut(s)	285
TspGWI	ACGGA	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	42
XceI	RCATGY	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.