pycom10g19530

establishment of protein localization to peroxisome

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
22601320 .. 22602178
859 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 519 bp
ATGCAGGTGAGGCTTCTCCATGAAGAAATGAGGTTTCCTTTCGTGGTTGAACGGCCGCACTACCATTACATTCCGAGTTGCTTCAACCTTCCCGAAGAAAGCCGTGGTTGCTCCAAAACGACGCATGGTGATCCTTCCATGCTCTCTTCTAATGGAAAGAATCATATTTCAAGGGCACTACTGCGCGCTCAAGATTCAGACAGGAGACTAGTTCACAAAACTTATGTCAAAGGCATTGAGCTTGGAGTTGTTCCGACTTCTGTTGCTATGATTCACCCTGAAACAGAAACAAAATGTTCTCTTTACAATCTCTTGAGTCAACTCCAAGGGAATCTAACGGTGGAAATATCGGAAAAGGACAACCGTGAAGCAATTGTTCGGCTGTTGATTTCCGATGCAGTTGTTAAAGGGCATGTAATGATTCAGTTGTATGGCATATACAACCAGTTCTTGGATTCAAAGAGATGTGTTTCTACACAGTCGAGAGATGCAAAAGGCAAGAGGGCAACCCTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0001881 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006810 GO:0006886 GO:0006996 GO:0007017 GO:0007031 GO:0007275 GO:0007276 GO:0007283 GO:0007399 GO:0007417 GO:0007422 GO:0008022 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0010001 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016462 GO:0016558 GO:0016562 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017076 GO:0017111 GO:0019395 GO:0019752 GO:0019953 GO:0021782 GO:0022008 GO:0022412 GO:0022414 GO:0023051 GO:0030154 GO:0030258 GO:0030554 GO:0031090 GO:0031903 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0035639 GO:0036094 GO:0042063 GO:0042579 GO:0042623 GO:0042886 GO:0043112 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0044743 GO:0044877 GO:0045184 GO:0046395 GO:0046907 GO:0046982 GO:0046983 GO:0048137 GO:0048232 GO:0048468 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0051179 GO:0051234 GO:0051301 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0055085 GO:0055114 GO:0060151 GO:0060152 GO:0065002 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901575
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.49

Weight (kDa)

9.1

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028230)

Species Orthologous Gene IDs
malus_domestica MD10G1232000.v1.1
pyrus_communis pycom10g19530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 451
AccII CGCG 1 cut(s) 186
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 125
AcoI YGGCCR 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 4 cut(s) 50, 85, 171, 459
AhlI ACTAGT 1 cut(s) 208
AjnI CCWGG 1 cut(s) 510
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 125
AoxI GGCC 1 cut(s) 53
ArsI GACNNNNNNTTYG 2 cut(s) 210, 242
AspLEI GCGC 2 cut(s) 186, 188
AsuHPI GGTGA 3 cut(s) 19, 140, 266
BaeGI GKGCMC 1 cut(s) 178
BceAI ACGGC 2 cut(s) 68, 87
BciT130I CCWGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 199
BcuI ACTAGT 1 cut(s) 208
BfaI CTAG 1 cut(s) 209
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 512
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 385, 478
BpuEI CTTGAG 2 cut(s) 174, 334
BsaJI CCNNGG 3 cut(s) 103, 325, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 3 cut(s) 103, 325, 510
BseLI CCNNNNNNNGG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 445
BsePI GCGCGC 1 cut(s) 184
BseSI GKGCMC 1 cut(s) 178
BseX3I CGGCCG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 55
BspFNI CGCG 1 cut(s) 186
BspPI GGATC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 103, 325, 510
BssHII GCGCGC 1 cut(s) 184
BssMI GATC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 325
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 3 cut(s) 340, 365, 480
Bst6I CTCTTC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 2 cut(s) 186, 188
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 10, 108, 512
BstNI CCWGG 1 cut(s) 512
BstNSI RCATGY 1 cut(s) 416
BstSCI CCNGG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 186
CfoI GCGC 2 cut(s) 186, 188
CseI GACGC 1 cut(s) 130
CviAII CATG 5 cut(s) 20, 125, 139, 413, 516
CviJI RGCY 5 cut(s) 13, 55, 102, 241, 382
CviKI_1 RGCY 5 cut(s) 13, 55, 102, 241, 382
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 53
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 325
Eco52I CGGCCG 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 5 cut(s) 23, 128, 142, 416, 519
FatI CATG 5 cut(s) 19, 124, 138, 412, 515
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 209
GlaI GCGC 2 cut(s) 185, 187
GluI GCNGC 1 cut(s) 56
HaeIII GGCC 1 cut(s) 55
HgaI GACGC 1 cut(s) 130
HhaI GCGC 2 cut(s) 186, 188
Hin1II CATG 5 cut(s) 23, 128, 142, 416, 519
Hin6I GCGC 2 cut(s) 184, 186
HinP1I GCGC 2 cut(s) 184, 186
HincII GTYRAC 1 cut(s) 320
HindII GTYRAC 1 cut(s) 320
HinfI GANTC 7 cut(s) 160, 194, 271, 316, 331, 421, 455
HphI GGTGA 3 cut(s) 19, 140, 266
Hpy166II GTNNAC 2 cut(s) 214, 320
Hpy188I TCNGA 5 cut(s) 75, 199, 255, 352, 394
Hpy188III TCNNGA 4 cut(s) 92, 191, 313, 483
Hpy8I GTNNAC 2 cut(s) 214, 320
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 98, 144
HpyCH4III ACNGT 3 cut(s) 340, 365, 480
HpyCH4V TGCA 3 cut(s) 4, 398, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 108, 512
Hsp92II CATG 5 cut(s) 23, 128, 142, 416, 519
HspAI GCGC 2 cut(s) 184, 186
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 187, 291, 458, 497
LweI GCATC 2 cut(s) 385, 478
MaeI CTAG 1 cut(s) 209
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 3 cut(s) 35, 107, 138
MfeI CAATTG 1 cut(s) 372
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 372
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 3 cut(s) 3, 24, 495
MseI TTAA 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 512
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 512
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 3 cut(s) 10, 108, 512
NdeII GATC 1 cut(s) 130
NlaIII CATG 5 cut(s) 23, 128, 142, 416, 519
NspI RCATGY 1 cut(s) 416
PauI GCGCGC 1 cut(s) 184
PfeI GAWTC 6 cut(s) 160, 194, 271, 331, 421, 455
PflMI CCANNNNNTGG 1 cut(s) 451
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PteI GCGCGC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 405
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 1 cut(s) 130
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 1 cut(s) 178
SetI ASST 4 cut(s) 9, 35, 90, 243
SfaNI GCATC 2 cut(s) 385, 478
SmlI CTYRAG 2 cut(s) 189, 313
SmoI CTYRAG 2 cut(s) 189, 313
SpeI ACTAGT 1 cut(s) 208
Sse9I AATT 1 cut(s) 372
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 340, 365, 480
TaqI TCGA 1 cut(s) 482
TasI AATT 1 cut(s) 372
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 6 cut(s) 160, 194, 271, 331, 421, 455
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TspDTI ATGAA 1 cut(s) 36
Van91I CCANNNNNTGG 1 cut(s) 451
XceI RCATGY 1 cut(s) 416
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.