pycom10g19830

TLC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0029383
Physical Location & Seq
Forward (+)
22880351 .. 22881538
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 273 bp
ATGAGATGGTATCTTGATACAGCTGGTCTGAAGAGGTCCAGCGCATATCTCCTAAACGGCATTGTGATATTTTTATTATGGCTGGCGGCAAGAATTCTGCTGTTCGGTTACATGTTTTACCATGTTTACTTGCACTATGATATGATCATCCAGATGCACATCTTCGGATATCTTTTGGTCTTTGTCGTGCCAACAGTGCTAGCAGTAATGAATTTGATGTGGTTTGGAAAGATTATCAAGGGATTGATGAAGCAATTAGCCAAGATGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

91

Amino Acids

10.67

Weight (kDa)

9.85

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 1 - 80 1.2e-08 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029383)

Species Orthologous Gene IDs
pyrus_communis pycom10g19830
rosa_multiflora Rmu_sc0019526.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 86
AcsI RAATTY 2 cut(s) 93, 211
AcuI CTGAAG 1 cut(s) 50
AflIII ACRYGT 1 cut(s) 111
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
ApoI RAATTY 2 cut(s) 93, 211
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 36
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 1 cut(s) 36
BceAI ACGGC 1 cut(s) 73
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmsI GCATC 2 cut(s) 144, 255
BmtI GCTAGC 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 158
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 86
BspOI GCTAGC 1 cut(s) 203
BssMI GATC 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 84, 201
BstF5I GGATG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 115
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 84, 201
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 2 cut(s) 112, 122
CviJI RGCY 3 cut(s) 23, 82, 260
CviKI_1 RGCY 3 cut(s) 23, 82, 260
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 93
EcoRV GATATC 1 cut(s) 170
FaeI CATG 2 cut(s) 115, 125
FaiI YATR 6 cut(s) 46, 79, 113, 123, 138, 143
FatI CATG 2 cut(s) 111, 121
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 200
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 115, 125
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 30, 167
Hpy188III TCNNGA 2 cut(s) 14, 151
Hpy8I GTNNAC 1 cut(s) 127
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 133, 157, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
Hsp92II CATG 2 cut(s) 115, 125
HspAI GCGC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LpnPI CCDG 4 cut(s) 9, 52, 68, 164
LweI GCATC 2 cut(s) 144, 255
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 43, 154
MluCI AATT 3 cut(s) 93, 211, 254
MnlI CCTC 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 1 cut(s) 144
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 2 cut(s) 115, 125
NspI RCATGY 1 cut(s) 115
PciI ACATGT 1 cut(s) 111
PkrI GCNGC 1 cut(s) 88
PscI ACATGT 1 cut(s) 111
PspPI GGNCC 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 36
SetI ASST 2 cut(s) 25, 38
SfaNI GCATC 2 cut(s) 144, 255
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 3 cut(s) 93, 211, 254
SsiI CCGC 1 cut(s) 86
SspMI CTAG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 196
TasI AATT 3 cut(s) 93, 211, 254
TauI GCSGC 1 cut(s) 89
TscAI CASTG 1 cut(s) 201
TspDTI ATGAA 2 cut(s) 224, 263
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 2 cut(s) 93, 211
XceI RCATGY 1 cut(s) 115
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.