Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029384

Physical Location & Seq

Genomic Coordinates Reverse (-)

23212573 .. 23213854

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20280.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCGGTATTGAATGCTTGTGTTCAGTGCAAACAATGGGAAGGAGCATTTTGGGTTTTGCAGCAGTTAAAGCAACAAGGCCTACAGCCTGCCGCTACAACTTATGGACTTGTCATGGAGCCTGGAGATATCCTGTTTGATTTTCAGCTGTCAATGAAACAGGCATGTGGCAAGTACAACTTGGTTCACGAGTTTTTCAAGAAAGTGCAGAAAATTTCTATACCAAATGCTTTAACTTACATTTCTATACCAAATGCTTTAACTTACAGATGTATGTTACAATTTCTACTGGACTACTTTATTGTGAACACTCATTGGAGAGAAGGTAAAATAGATGAGGCTGTATCGGTTGTTCACAACATGGAAAGACAAGGGATAGTAGGTTATGCCGCTCTCTATTATGACTTTGCTCGATGCCTTTGTAGTGCTGGAAGGTGCCAAGAAGCTCTAATGCAGTTGGATCGCTTGTTCCATCATTCCTTCTCTTCGCAGATTGAGAAGATATGTAAGGTTGCAAATAAGCCTCTAGTAGTGACTTACACTGGTTTAATTCAAGCTTGTTTGGAAGCTGGAAGCATTGAAAAAGCGGCATATGCTTTCAAACAAATTGAGAACTTTTGCTCCCTAAATCTCGTTACTTGCAACATAATGCTGAAAGCTTACTTGGACCACGGAATGTTTGAAAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

231

Amino Acids

26.17

Weight (kDa)

7.96

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029384)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g20280
rosa_multiflora	Rmu_co8278371.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	435
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	3 cut(s)	93, 390, 587
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	176
AgsI	TTSAA	6 cut(s)	13, 199, 554, 581, 601, 683
AjnI	CCWGG	1 cut(s)	121
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AloI	GAACNNNNNNTCC	4 cut(s)	452, 484, 605, 637
AluBI	AGCT	6 cut(s)	148, 446, 557, 569, 659, 689
AluI	AGCT	6 cut(s)	148, 446, 557, 569, 659, 689
AlwI	GGATC	1 cut(s)	468
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	435
BauI	CACGAG	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	480
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	527
BfmI	CTRYAG	1 cut(s)	83
BisI	GCNGC	4 cut(s)	62, 93, 390, 588
BlsI	GCNGC	4 cut(s)	63, 94, 391, 589
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	667
BmiI	GGNNCC	2 cut(s)	120, 437
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	4 cut(s)	310, 340, 605, 635
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	294, 547
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	670
BseNI	ACTGG	2 cut(s)	294, 547
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	3 cut(s)	93, 390, 587
BspANI	GGCC	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	120, 437
BspPI	GGATC	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	435
BsrBI	CCGCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	294, 547
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	1 cut(s)	460
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	670
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	70, 593
BstNI	CCWGG	1 cut(s)	123
BstNSI	RCATGY	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	32, 540
Cac8I	GCNNGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	115, 165, 361
CviQI	GTAC	1 cut(s)	175
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco147I	AGGCCT	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	130
FaeI	CATG	3 cut(s)	118, 168, 364
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	3 cut(s)	114, 164, 360
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	4 cut(s)	62, 93, 390, 588
Fsp4HI	GCNGC	4 cut(s)	62, 93, 390, 588
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	4 cut(s)	62, 93, 390, 588
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	118, 168, 364
HindIII	AAGCTT	3 cut(s)	555, 657, 687
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	187, 307, 355
Hpy188III	TCNNGA	2 cut(s)	188, 199
Hpy8I	GTNNAC	3 cut(s)	187, 307, 355
HpyAV	CCTTC	4 cut(s)	35, 317, 426, 490
HpyCH4V	TGCA	6 cut(s)	30, 61, 208, 454, 515, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	70, 593
Hsp92II	CATG	3 cut(s)	118, 168, 364
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	3 cut(s)	44, 118, 626
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	1 cut(s)	527
MaeIII	GTNAC	3 cut(s)	276, 532, 634
MalI	GATC	1 cut(s)	462
MbiI	CCGCTC	1 cut(s)	392
MboI	GATC	1 cut(s)	460
MboII	GAAGA	2 cut(s)	477, 511
MluCI	AATT	4 cut(s)	213, 281, 549, 606
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	2 cut(s)	331, 534
MseI	TTAA	5 cut(s)	68, 233, 260, 548, 691
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	70, 593
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	118, 168, 364
NlaIV	GGNNCC	2 cut(s)	120, 437
NmuCI	GTSAC	1 cut(s)	532
NspI	RCATGY	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	81
PctI	GAATGC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	63, 94, 391, 589
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	120, 437
PspPI	GGNCC	1 cut(s)	667
PsrI	GAACNNNNNNTAC	2 cut(s)	336, 368
PvuII	CAGCTG	1 cut(s)	148
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	5 cut(s)	68, 233, 260, 548, 691
SatI	GCNGC	4 cut(s)	62, 93, 390, 588
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	667
Sse9I	AATT	4 cut(s)	213, 281, 549, 606
SseBI	AGGCCT	1 cut(s)	81
SsiI	CCGC	3 cut(s)	93, 390, 587
SspMI	CTAG	1 cut(s)	527
StuI	AGGCCT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	1 cut(s)	412
TasI	AATT	4 cut(s)	213, 281, 549, 606
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	3 cut(s)	95, 392, 590
Tru1I	TTAA	5 cut(s)	68, 233, 260, 548, 691
Tru9I	TTAA	5 cut(s)	68, 233, 260, 548, 691
TscAI	CASTG	2 cut(s)	32, 547
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	2 cut(s)	32, 547
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.