Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0029386

Physical Location & Seq

Genomic Coordinates Reverse (-)

25360238 .. 25361232

Gene Structure 995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCAGCTTTTGGAGAGTGGACTGAAGGTCAAGGAGTACGAGCTGTTGCGCAGGAACTTCAGTGACACCGGATGCTTTGGTTTCGGTATTCAGGAACACATTGATCTCGGAATCAAGTATGACCCTTCCACTGGTATCTATGGTATGGACTTCTATGTTGTCCTAGAGCGCCCAGGGTACCGTGTGGGACGTCGCCGCAGATGCAAGTCGCGCGTTGGTATTCAGCACAGGGTTACCAAGGAGGACTCGATGAAGTGGTTCCAGGTCAAATATGAAGGAGTCATCCTCAACAAGTCCCAAAATATTACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

105

Amino Acids

12.14

Weight (kDa)

9.51

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5_C	PF00673	2 - 86	7.5e-13	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0029386)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g23120
rosa_samantha	Rh5CG097100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	193
Acc16I	TGCGCA	1 cut(s)	50
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AccII	CGCG	2 cut(s)	211, 213
AciI	CCGC	1 cut(s)	196
AcuI	CTGAAG	2 cut(s)	43, 44
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	2 cut(s)	38, 179
AfiI	CCNNNNNNNGG	1 cut(s)	131
AhdI	GACNNNNNGTC	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	172, 261
AluBI	AGCT	2 cut(s)	7, 43
AluI	AGCT	2 cut(s)	7, 43
ApeKI	GCWGC	1 cut(s)	4
Asp700I	GAANNNNTTC	1 cut(s)	257
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	3 cut(s)	51, 171, 213
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	16
BciT130I	CCWGG	2 cut(s)	174, 263
BfaI	CTAG	2 cut(s)	164, 313
BfoI	RGCGCY	1 cut(s)	172
BisI	GCNGC	2 cut(s)	5, 196
BlsI	GCNGC	2 cut(s)	6, 197
Bme1390I	CCNGG	2 cut(s)	174, 263
BmeRI	GACNNNNNGTC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	179, 260
BmrFI	CCNGG	2 cut(s)	174, 263
BmsI	GCATC	2 cut(s)	62, 191
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	172, 173, 237
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	174, 263
BseDI	CCNNGG	3 cut(s)	172, 173, 237
BseGI	GGATG	2 cut(s)	77, 282
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	2 cut(s)	211, 213
BshNI	GGYRCC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	69, 309
BslFI	GGGAC	2 cut(s)	201, 280
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	201, 280
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	196
BspFNI	CGCG	2 cut(s)	211, 213
BspLI	GGNNCC	2 cut(s)	179, 260
BspT107I	GGYRCC	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	172, 173, 237
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	174, 263
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	190
BstEII	GGTNACC	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	77, 282
BstFNI	CGCG	2 cut(s)	211, 213
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	3 cut(s)	51, 171, 213
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	201, 210
BstNI	CCWGG	2 cut(s)	174, 263
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	172, 261
BstUI	CGCG	2 cut(s)	211, 213
BstV1I	GCAGC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	77, 282
BtsIMutI	CAGTG	2 cut(s)	67, 129
CfoI	GCGC	3 cut(s)	51, 171, 213
Cfr10I	RCCGGY	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	37, 178
CviJI	RGCY	3 cut(s)	7, 43, 312
CviKI_1	RGCY	3 cut(s)	7, 43, 312
CviQI	GTAC	2 cut(s)	37, 178
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
DriI	GACNNNNNGTC	1 cut(s)	26
Eam1105I	GACNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	43, 44
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	2 cut(s)	172, 261
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	5 cut(s)	120, 141, 146, 156, 273
FaqI	GGGAC	2 cut(s)	201, 280
Fnu4HI	GCNGC	2 cut(s)	5, 196
FokI	GGATG	2 cut(s)	84, 269
Fsp4HI	GCNGC	2 cut(s)	5, 196
FspBI	CTAG	2 cut(s)	164, 313
FspI	TGCGCA	1 cut(s)	50
GlaI	GCGC	3 cut(s)	50, 170, 212
GluI	GCNGC	2 cut(s)	5, 196
HaeII	RGCGCY	1 cut(s)	172
HapII	CCGG	2 cut(s)	69, 309
HhaI	GCGC	3 cut(s)	51, 171, 213
Hin1I	GRCGYC	1 cut(s)	190
Hin6I	GCGC	3 cut(s)	49, 169, 211
HinP1I	GCGC	3 cut(s)	49, 169, 211
HinfI	GANTC	3 cut(s)	111, 245, 279
HpaII	CCGG	2 cut(s)	69, 309
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	20
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	3 cut(s)	19, 135, 269
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	4, 204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	201, 210
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	190
HspAI	GCGC	3 cut(s)	49, 169, 211
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	9 cut(s)	37, 77, 82, 117, 159, 186, 214, 248, 275
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	2 cut(s)	62, 191
MaeI	CTAG	2 cut(s)	164, 313
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	2 cut(s)	62, 232
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	239, 288
MnlI	CCTC	2 cut(s)	235, 296
MroXI	GAANNNNTTC	1 cut(s)	257
MspI	CCGG	2 cut(s)	69, 309
MspR9I	CCNGG	2 cut(s)	174, 263
MvaI	CCWGG	2 cut(s)	174, 263
MvnI	CGCG	2 cut(s)	211, 213
MwoI	GCNNNNNNNGC	2 cut(s)	201, 210
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	179, 260
NmuCI	GTSAC	1 cut(s)	62
NsbI	TGCGCA	1 cut(s)	50
PasI	CCCWGGG	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	2 cut(s)	6, 197
PleI	GAGTC	2 cut(s)	239, 287
PpsI	GAGTC	2 cut(s)	239, 287
Psp6I	CCWGG	2 cut(s)	172, 261
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	172, 261
PspN4I	GGNNCC	2 cut(s)	179, 260
RsaI	GTAC	2 cut(s)	38, 179
RsaNI	GTAC	2 cut(s)	37, 178
SatI	GCNGC	2 cut(s)	5, 196
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	2 cut(s)	239, 288
ScrFI	CCNGG	2 cut(s)	174, 263
SetI	ASST	5 cut(s)	9, 30, 45, 193, 267
SfaNI	GCATC	2 cut(s)	62, 191
SsiI	CCGC	1 cut(s)	196
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	2 cut(s)	164, 313
StyD4I	CCNGG	2 cut(s)	172, 261
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	248
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	111
TscAI	CASTG	2 cut(s)	67, 136
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	266, 288
TspRI	CASTG	2 cut(s)	67, 136
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	2 cut(s)	164, 313
ZraI	GACGTC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.