Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0029386

Physical Location & Seq

Genomic Coordinates Forward (+)

7725449 .. 7726576

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTCACTGTTGGAGAGTGGGCTCAAGGTGAAGGAGTATGAGCTTTTGCGTAAGAACTTCAGTGACACTGGCTGCTTTGGATTCGGTATTCAGGAGCATATTGATCTTGGAATTAAGTATGACCCTTCCACCGGTATCTACGGTATGGACTTCTATGTTGTTCTTGAGCGCCCAGGGTACCGTGTTGGCCGTCGTCGCAGGTGCAAGGCCCGAGTTGGAATTCAACACAGAGTTACAAAGGATGATGCAATGAAGTGGTTCCAAGTGAAATATGAGGGAGTCATCCTTAACAAGTCCCAAGCAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

103

Amino Acids

11.92

Weight (kDa)

9.48

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5_C	PF00673	3 - 86	8.9e-13	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0029386)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g23120
rosa_samantha	Rh5CG097100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	189
Acc65I	GGTACC	1 cut(s)	177
AccB1I	GGYRCC	1 cut(s)	177
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	1 cut(s)	43
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	187, 207
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	219
AsiGI	ACCGGT	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	257
Asp718I	GGTACC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	189
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	2 cut(s)	179, 260
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	235
BpuEI	CTTGAG	2 cut(s)	8, 185
BsaJI	CCNNGG	2 cut(s)	172, 173
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	172, 173
BseGI	GGATG	2 cut(s)	247, 282
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	2 cut(s)	189, 209
BshNI	GGYRCC	1 cut(s)	177
BshTI	ACCGGT	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	2 cut(s)	189, 209
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	189, 209
BspLI	GGNNCC	2 cut(s)	179, 260
BspMI	ACCTGC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	172, 173
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	9, 143, 182
BstF5I	GGATG	2 cut(s)	247, 282
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	189, 209
BtsCI	GGATG	2 cut(s)	247, 282
BtsIMutI	CAGTG	3 cut(s)	5, 66, 67
BveI	ACCTGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	171
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	178
CspAI	ACCGGT	1 cut(s)	131
CviJI	RGCY	5 cut(s)	22, 43, 72, 189, 209
CviKI_1	RGCY	5 cut(s)	22, 43, 72, 189, 209
CviQI	GTAC	1 cut(s)	178
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	43
Eco88I	CYCGRG	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	24
FaiI	YATR	6 cut(s)	39, 99, 120, 146, 156, 273
FaqI	GGGAC	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	254, 269
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	73
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	189, 209
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	171
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	81, 279
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	40
Hpy188III	TCNNGA	2 cut(s)	92, 164
Hpy99I	CGWCG	2 cut(s)	195, 198
HpyAV	CCTTC	2 cut(s)	25, 135
HpyCH4III	ACNGT	3 cut(s)	9, 143, 182
HpyCH4V	TGCA	2 cut(s)	204, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	195
HspAI	GCGC	1 cut(s)	169
KpnI	GGTACC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	6 cut(s)	54, 77, 145, 159, 184, 186
Lsp1109I	GCAGC	1 cut(s)	59
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	3 cut(s)	3, 62, 232
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	3 cut(s)	111, 219, 303
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	257
MseI	TTAA	2 cut(s)	114, 288
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	174
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	1 cut(s)	195
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	179, 260
NmuCI	GTSAC	2 cut(s)	3, 62
PaqCI	CACCTGC	1 cut(s)	189
PasI	CCCWGGG	1 cut(s)	173
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	179, 260
PspPI	GGNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	114, 288
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	3 cut(s)	30, 45, 203
SfaNI	GCATC	1 cut(s)	235
SmlI	CTYRAG	2 cut(s)	23, 164
SmoI	CTYRAG	2 cut(s)	23, 164
Sse9I	AATT	3 cut(s)	111, 219, 303
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	9, 143, 182
TasI	AATT	3 cut(s)	111, 219, 303
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	114, 288
Tru9I	TTAA	2 cut(s)	114, 288
TscAI	CASTG	3 cut(s)	12, 67, 73
TseFI	GTSAC	2 cut(s)	3, 62
TseI	GCWGC	1 cut(s)	72
Tsp45I	GTSAC	2 cut(s)	3, 62
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	12, 67, 73
XapI	RAATTY	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.