pycom10g25040

RNA polymerase-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0028037
Physical Location & Seq
Forward (+)
26728859 .. 26729152
294 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 294 bp
ATGGCAGCTACTGCGGCAGCTCTGGAAGCTGCAGCTGGTGCGGGGAAGCTGATTGATAAGAGTGCTACTCTTGATTTTGGAATAGATTCAAATCTAAGGCACAATTTTGAGCTGCCAATGTCAATGGCCGCTCTTCAAAAGTTTGGCGTGCCACAAGGAGCTCAGGAAGGGTTCCTGGCAAGAAAACAGCGAATAGAAGCAACAGTTGGGTGTCGAGTCCCAAAGAATGACGGGCAGAGGCATACACTGACACTTACAGTTAGCGACTACAAGAGAATAAGAGGGCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plus-3

Protein Analysis

98

Amino Acids

10.4

Weight (kDa)

9.65

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028037)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03622
pyrus_communis pycom10g25040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 3 cut(s) 14, 41, 129
AcoI YGGCCR 1 cut(s) 126
AgsI TTSAA 2 cut(s) 90, 137
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 189, 221
AluBI AGCT 7 cut(s) 8, 20, 29, 35, 49, 112, 161
AluI AGCT 7 cut(s) 8, 20, 29, 35, 49, 112, 161
Alw21I GWGCWC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 5 cut(s) 5, 17, 29, 32, 112
Asp700I GAANNNNTTC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 5 cut(s) 16, 17, 29, 44, 99
BciT130I CCWGG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 7 cut(s) 6, 15, 18, 30, 33, 113, 129
BlsI GCNGC 7 cut(s) 7, 16, 19, 31, 34, 114, 130
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 1 cut(s) 176
BplI GAGNNNNNCTC 3 cut(s) 52, 84, 273
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 90
BseBI CCWGG 1 cut(s) 176
BseJI GATNNNNATC 1 cut(s) 90
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 5 cut(s) 16, 17, 29, 44, 99
BshFI GGCC 1 cut(s) 128
BsiHKAI GWGCWC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 163
BspACI CCGC 3 cut(s) 14, 41, 129
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 173
BspMAI CTGCAG 1 cut(s) 34
BspQI GCTCTTC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 205, 259
Bst6I CTCTTC 1 cut(s) 138
BstAPI GCANNNNNTGC 2 cut(s) 11, 38
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 95, 162
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 26, 38
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 5 cut(s) 16, 17, 29, 44, 99
BsuRI GGCC 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 11
CviJI RGCY 9 cut(s) 8, 20, 29, 35, 49, 112, 128, 161, 286
CviKI_1 RGCY 9 cut(s) 8, 20, 29, 35, 49, 112, 128, 161, 286
DdeI CTNAG 2 cut(s) 95, 162
EaeI YGGCCR 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 163
FaiI YATR 1 cut(s) 243
FaqI GGGAC 1 cut(s) 203
FauI CCCGC 1 cut(s) 34
Fnu4HI GCNGC 7 cut(s) 6, 15, 18, 30, 33, 113, 129
FriOI GRGCYC 1 cut(s) 163
Fsp4HI GCNGC 7 cut(s) 6, 15, 18, 30, 33, 113, 129
GluI GCNGC 7 cut(s) 6, 15, 18, 30, 33, 113, 129
HaeIII GGCC 1 cut(s) 128
HinfI GANTC 2 cut(s) 86, 216
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 3 cut(s) 23, 71, 164
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 205, 259
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 26, 38
HpyF3I CTNAG 2 cut(s) 95, 162
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 5 cut(s) 8, 21, 149, 161, 188
Lsp1109I GCAGC 5 cut(s) 16, 17, 29, 44, 99
MbiI CCGCTC 1 cut(s) 131
MboII GAAGA 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 225
MnlI CCTC 2 cut(s) 231, 275
MroXI GAANNNNTTC 1 cut(s) 85
MspA1I CMGCKG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 26, 38
NlaIV GGNNCC 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 7 cut(s) 7, 16, 19, 31, 34, 114, 130
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 173
PstI CTGCAG 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 11
PvuII CAGCTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 7 cut(s) 6, 15, 18, 30, 33, 113, 129
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 163
SetI ASST 7 cut(s) 10, 22, 31, 37, 51, 114, 163
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 14, 41, 129
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 205, 259
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 103
TauI GCSGC 2 cut(s) 17, 131
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 252
TseI GCWGC 5 cut(s) 5, 17, 29, 32, 112
TspRI CASTG 1 cut(s) 252
XmnI GAANNNNTTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.