Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0028205

Physical Location & Seq

Genomic Coordinates Forward (+)

27895005 .. 27895475

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTTTCATTGATTACGAATATTGCTAAATATTTTATTACATGGACTTCGCAGCTACGTCTTGCTGCTACTAGCTATGTAACGAAGGATATCACAGGACCTGGTGATTATGGTGGCTTCCCAGCTGTAAGTATCATCTTGCAAATTTCTTCTGAAATAAATGAGAATAAAAAGAAATTTGTTTTCATGTATTGTGTTTGCGTACCAAGTATATGGAGCCGGAACTGGGTGATGGTTGGATGTTTGGGATATATAAATGACATAATTTGGTTGTGTTTTAGGTTCATCTCCATGAGTGGCGAAGACAAGTTGCAAACTACTGTCGGACATAAAAAAAGTGGAACCCTGAGAATCGTTAGAAAGGAAAATCAGGTGCTCTCTTATCTGGCACTGAAATTTTGGAGGGAATTTTGGTTTGGTTCACACCAGCTCTCTAGGCTCTTGGTTTATATTAATATTAGGCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043764 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

157

Amino Acids

18.13

Weight (kDa)

9.66

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028205)

Species	Orthologous Gene IDs
malus_domestica	MD10G1314000.v1.1
pyrus_communis	pycom10g26610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	144, 176, 395, 407
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	4 cut(s)	55, 75, 125, 430
AluI	AGCT	4 cut(s)	55, 75, 125, 430
Alw21I	GWGCWC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	52, 65
ApoI	RAATTY	4 cut(s)	144, 176, 395, 407
AseI	ATTAAT	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	98
AsuHPI	GGTGA	2 cut(s)	116, 241
AvaII	GGWCC	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	52, 64
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	102
BfaI	CTAG	2 cut(s)	72, 435
BisI	GCNGC	2 cut(s)	53, 66
BlsI	GCNGC	2 cut(s)	54, 67
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	218, 343
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	52, 64
BseYI	CCCAGC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	218, 343
BsrI	ACTGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	52, 64
BstV2I	GAAGAC	1 cut(s)	309
BstXI	CCANNNNNNTGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	3 cut(s)	42, 187, 292
CviJI	RGCY	7 cut(s)	55, 75, 117, 125, 219, 430, 439
CviKI_1	RGCY	7 cut(s)	55, 75, 117, 125, 219, 430, 439
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	91
FaeI	CATG	3 cut(s)	45, 190, 295
FatI	CATG	3 cut(s)	41, 186, 291
Fnu4HI	GCNGC	2 cut(s)	53, 66
FokI	GGATG	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	53, 66
FspBI	CTAG	2 cut(s)	72, 435
GluI	GCNGC	2 cut(s)	53, 66
GsaI	CCCAGC	1 cut(s)	125
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	3 cut(s)	45, 190, 295
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	116, 241
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	154, 326
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	142, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	347
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	45, 190, 295
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	2 cut(s)	52, 64
MabI	ACCWGGT	1 cut(s)	100
MaeI	CTAG	2 cut(s)	72, 435
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	141, 314
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	5 cut(s)	144, 176, 264, 395, 407
MmeI	TCCRAC	2 cut(s)	217, 304
MnlI	CCTC	1 cut(s)	396
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	45, 190, 295
NlaIV	GGNNCC	2 cut(s)	218, 343
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	54, 67
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	218, 343
PspPI	GGNCC	1 cut(s)	98
PspPPI	RGGWCCY	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	453
SatI	GCNGC	2 cut(s)	53, 66
Sau96I	GGNCC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	8 cut(s)	57, 61, 77, 103, 127, 284, 375, 432
SexAI	ACCWGGT	1 cut(s)	100
SinI	GGWCC	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	5 cut(s)	144, 176, 264, 395, 407
SspI	AATATT	3 cut(s)	22, 32, 457
SspMI	CTAG	2 cut(s)	72, 435
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	61
TasI	AATT	5 cut(s)	144, 176, 264, 395, 407
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	52, 65
TspDTI	ATGAA	2 cut(s)	175, 274
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	98
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	4 cut(s)	144, 176, 395, 407
XspI	CTAG	2 cut(s)	72, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.