pycom10g27910

splicing factor 3A subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
28745286 .. 28747329
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27910.3

Sequence Viewer

Length: 1395 bp
ATGTTTTACTTCACGCTTGCCATTTCGGAATCCAAAACGACATCGCACACTAGGATTATCGGCGTCATACGTCCTCCCCAAGACATCAGAACCATCGTCGACAAAACCGCGCACTTCGTGGCGAAAAACGGACCCGAATTCGTGAAAAGAATCGTCGCTGAAAATTCTGGAAATTCGAAGTTCGACTTTTTGAGTTCTTTAAACTCTGCCGCGCCAGAGTTGGCGGCGCCACCGGCTCCCGCCTCAGATGGTGGAGCAGGGTCACCAACGCCTGATCCCTCTGCCCAGTTTAAAACGGTGCAAGAGGCATTCGAGACACCGGAAGCTGAGCAGTATGCTGTTCGGATTCCGGAAGGGATTACTGGGGAAGAGTTGGACATTGTTAAGCTGACAGCCCAGTTCATGGCTCGAAACGGGAAGTCATTTTTGGCGGGATTGACAAGCAGGGAAATCAAGAACTCCCAGTTCAGTTTTCTGAAGCCGGGCAGTGTGATGTTTGCGTTTTTCACCTCTCTTGCTGATGCGTATTCGAAGGTGTTGATGCCACCGGAGGGTTTAACAGAGAAGCTTAGGAGAAGTGTTGCAGACATGGAAACCGTGCTTGAACGGTGTGCAAACGGCTGGAGTGGGAGCAGTCACAAGAGAAGGAAAGGCGGAAGAGTAGATTTTGTGGACAATGAGGATGAGTATTTACCTTCTCCGATGACGGTTGAGGAGGTTTCTAGGAGGATCAGGGTCACGGATACGGAAGAAGATGTTGTCGAGTTTGATAAGGAGATTGAAATGGAAATGGATGACGAAGAGATGCAGCTTGTTGAAGAGGGGTTGGCGACAAAGGACGTAGAAGAACCGATGAGAGTTGTGAAGAACTGGAGGAGACCAGAGGAGAGGATTCAAGCCGAGAGAGACTCAACGAATGAGATGTCTGAATACATGAGGATTTCTCTCATTGATCCGAAATTCAAAGAGCAGAAAGAGAGGATGTTTGCTAAGATTAGGGATACTACTCTTGCTCAGGATGACGAAATCTCAAGGAACATTATGGGACTTGCAAGAACCCGTCCTGATATTTTCGGTACCACAGAGGAAGAGGTTTCTAATGCTGTCAGGGTTGAGATCGAAAAAAAGAAAGATGAGCAAGAAAAGCAGGTCATATGGGATGGTCACACTGGAACCATTGGCTTTAAACAAAATTATGTTCTTAACAATGATGCAAGGAACCTTCCCGGTCCTACAGCACCTCCTCCAAAACTGAATGTGCCTTCAGCTCGTACTCTTCCCCCGCCACCTGGTCCGACCTTGAATCTACCTTGTGTTCCTCTAAACACAGTCCCGTATTTTAAACCCATGCAAGTTCCCCGTGCCTGTCATGCCTCCACCACCACCACCACCTGA

Protein Analysis

465

Amino Acids

51.92

Weight (kDa)

5.15

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028199)

Species Orthologous Gene IDs
malus_domestica MD10G1329300.v1.1
pyrus_communis pycom10g27910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1138
Acc65I GGTACC 1 cut(s) 1076
AccB1I GGYRCC 2 cut(s) 226, 1076
AccB7I CCANNNNNTGG 1 cut(s) 403
AccI GTMKAC 1 cut(s) 99
AccII CGCG 2 cut(s) 110, 212
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 7 cut(s) 108, 210, 224, 240, 431, 654, 1283
AclWI GGATC 3 cut(s) 269, 737, 947
AcsI RAATTY 4 cut(s) 137, 163, 172, 959
AcuI CTGAAG 2 cut(s) 497, 1248
AcyI GRCGYC 2 cut(s) 63, 227
AdeI CACNNNGTG 1 cut(s) 118
AfaI GTAC 2 cut(s) 1078, 1273
AfiI CCNNNNNNNGG 3 cut(s) 403, 551, 1289
AgsI TTSAA 6 cut(s) 605, 782, 818, 896, 964, 1303
AjnI CCWGG 1 cut(s) 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 326, 388, 568, 811, 1268
AluI AGCT 5 cut(s) 326, 388, 568, 811, 1268
Alw26I GTCTC 3 cut(s) 308, 871, 900
AlwI GGATC 3 cut(s) 269, 737, 947
Aor13HI TCCGGA 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 808
ApoI RAATTY 4 cut(s) 137, 163, 172, 959
ArsI GACNNNNNNTTYG 2 cut(s) 908, 940
Asp718I GGTACC 1 cut(s) 1076
AspLEI GCGC 3 cut(s) 112, 214, 229
AspS9I GGNCC 3 cut(s) 131, 1229, 1292
AsuC2I CCSGG 2 cut(s) 483, 1227
AsuHPI GGTGA 2 cut(s) 255, 499
AsuII TTCGAA 2 cut(s) 176, 530
AvaII GGWCC 3 cut(s) 131, 1229, 1292
BanI GGYRCC 2 cut(s) 226, 1076
BbvI GCAGC 1 cut(s) 820
BccI CCATC 3 cut(s) 101, 242, 1154
BceAI ACGGC 1 cut(s) 634
BciT130I CCWGG 1 cut(s) 1290
BciVI GTATCC 2 cut(s) 736, 994
BcnI CCSGG 2 cut(s) 483, 1227
BcoDI GTCTC 3 cut(s) 308, 871, 900
BfaI CTAG 2 cut(s) 51, 723
BfmI CTRYAG 1 cut(s) 1233
BfoI RGCGCY 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 1138
BfuI GTATCC 2 cut(s) 736, 994
BisI GCNGC 3 cut(s) 210, 225, 809
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 3 cut(s) 211, 226, 810
Bme1390I CCNGG 3 cut(s) 483, 1227, 1290
Bme18I GGWCC 3 cut(s) 131, 1229, 1292
BmgT120I GGNCC 3 cut(s) 131, 1229, 1292
BmiI GGNNCC 6 cut(s) 133, 228, 237, 1078, 1174, 1220
BmrFI CCNGG 3 cut(s) 483, 1227, 1290
BmrI ACTGGG 4 cut(s) 280, 372, 391, 457
BmsI GCATC 4 cut(s) 511, 531, 795, 1201
BmuI ACTGGG 4 cut(s) 280, 372, 391, 457
BplI GAGNNNNNCTC 4 cut(s) 893, 925, 928, 960
BpmI CTGGAG 2 cut(s) 643, 892
Bpu10I CCTNAGC 2 cut(s) 569, 1014
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 2 cut(s) 176, 530
BpuEI CTTGAG 1 cut(s) 1015
BpuMI CCSGG 2 cut(s) 483, 1227
BsaHI GRCGYC 2 cut(s) 63, 227
BsaI GGTCTC 1 cut(s) 871
BsaWI WCCGGW 3 cut(s) 319, 349, 547
BsaXI ACNNNNNCTCC 2 cut(s) 1225, 1255
Bsc4I CCNNNNNNNGG 3 cut(s) 403, 551, 1289
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 6 cut(s) 286, 367, 397, 463, 875, 1174
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 1290
BseGI GGATG 5 cut(s) 688, 799, 987, 1024, 1165
BseLI CCNNNNNNNGG 3 cut(s) 403, 551, 1289
BseMII CTCAG 3 cut(s) 258, 318, 1028
BseNI ACTGG 6 cut(s) 286, 367, 397, 463, 875, 1174
BseRI GAGGAG 4 cut(s) 728, 889, 899, 1233
BseXI GCAGC 1 cut(s) 820
Bsh1236I CGCG 2 cut(s) 110, 212
BshNI GGYRCC 2 cut(s) 226, 1076
BsiSI CCGG 6 cut(s) 233, 320, 350, 482, 548, 1227
BslFI GGGAC 2 cut(s) 1059, 1316
BslI CCNNNNNNNGG 3 cut(s) 403, 551, 1289
BsmAI GTCTC 3 cut(s) 308, 871, 900
BsmFI GGGAC 2 cut(s) 1059, 1316
BsmI GAATGC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 871
Bsp119I TTCGAA 2 cut(s) 176, 530
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 4 cut(s) 274, 729, 952, 1116
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 7 cut(s) 108, 210, 224, 240, 431, 654, 1283
BspCNI CTCAG 3 cut(s) 257, 319, 1027
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 2 cut(s) 110, 212
BspLI GGNNCC 6 cut(s) 133, 228, 237, 1078, 1174, 1220
BspMI ACCTGC 1 cut(s) 1138
BspPI GGATC 3 cut(s) 269, 737, 947
BspT104I TTCGAA 2 cut(s) 176, 530
BspT107I GGYRCC 2 cut(s) 226, 1076
BspTNI GGTCTC 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 6 cut(s) 286, 367, 397, 463, 875, 1174
BssAI RCCGGY 1 cut(s) 232
BssMI GATC 4 cut(s) 274, 729, 952, 1116
BssNI GRCGYC 2 cut(s) 63, 227
Bst2UI CCWGG 1 cut(s) 1290
Bst4CI ACNGT 5 cut(s) 298, 598, 609, 709, 1330
Bst6I CTCTTC 6 cut(s) 363, 652, 795, 813, 1083, 1281
BstACI GRCGYC 2 cut(s) 63, 227
BstBI TTCGAA 2 cut(s) 176, 530
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 5 cut(s) 244, 327, 569, 990, 1014
BstEII GGTNACC 1 cut(s) 261
BstF5I GGATG 5 cut(s) 688, 799, 987, 1024, 1165
BstFNI CGCG 2 cut(s) 110, 212
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 3 cut(s) 112, 214, 229
BstKTI GATC 4 cut(s) 277, 732, 955, 1119
BstMAI GTCTC 3 cut(s) 308, 871, 900
BstMBI GATC 4 cut(s) 274, 729, 952, 1116
BstMWI GCNNNNNNNGC 3 cut(s) 233, 1144, 1370
BstNI CCWGG 1 cut(s) 1290
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 3 cut(s) 481, 1225, 1288
BstSFI CTRYAG 1 cut(s) 1233
BstUI CGCG 2 cut(s) 110, 212
BstV1I GCAGC 1 cut(s) 820
BsuI GTATCC 2 cut(s) 736, 994
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 5 cut(s) 688, 799, 987, 1024, 1165
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 493, 1167
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 1 cut(s) 18
CfoI GCGC 3 cut(s) 112, 214, 229
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 3 cut(s) 131, 1229, 1292
CseI GACGC 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 1288
Csp6I GTAC 2 cut(s) 1077, 1272
CviAII CATG 5 cut(s) 403, 589, 934, 1348, 1370
CviQI GTAC 2 cut(s) 1077, 1272
DdeI CTNAG 5 cut(s) 244, 327, 569, 990, 1014
DinI GGCGCC 1 cut(s) 228
DpnI GATC 4 cut(s) 276, 731, 954, 1118
DpnII GATC 4 cut(s) 274, 729, 952, 1116
DraI TTTAAA 4 cut(s) 201, 292, 1186, 1342
DraIII CACNNNGTG 1 cut(s) 118
Eam1104I CTCTTC 6 cut(s) 363, 652, 795, 813, 1083, 1281
EarI CTCTTC 6 cut(s) 363, 652, 795, 813, 1083, 1281
EciI GGCGGA 1 cut(s) 669
Eco31I GGTCTC 1 cut(s) 871
Eco47I GGWCC 3 cut(s) 131, 1229, 1292
Eco57I CTGAAG 2 cut(s) 497, 1248
Eco91I GGTNACC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 1288
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
FaeI CATG 5 cut(s) 406, 592, 937, 1351, 1373
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 2 cut(s) 1059, 1316
FatI CATG 5 cut(s) 402, 588, 933, 1347, 1369
FauI CCCGC 3 cut(s) 247, 424, 1290
FauNDI CATATG 1 cut(s) 1154
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 210, 225, 809
FokI GGATG 5 cut(s) 695, 806, 994, 1031, 1172
Fsp4HI GCNGC 3 cut(s) 210, 225, 809
FspBI CTAG 2 cut(s) 51, 723
GlaI GCGC 3 cut(s) 111, 213, 228
GluI GCNGC 3 cut(s) 210, 225, 809
GsuI CTGGAG 2 cut(s) 643, 892
HaeII RGCGCY 1 cut(s) 230
HapII CCGG 6 cut(s) 233, 320, 350, 482, 548, 1227
HgaI GACGC 1 cut(s) 52
HhaI GCGC 3 cut(s) 112, 214, 229
Hin1I GRCGYC 2 cut(s) 63, 227
Hin1II CATG 5 cut(s) 406, 592, 937, 1351, 1373
Hin6I GCGC 3 cut(s) 110, 212, 227
HinP1I GCGC 3 cut(s) 110, 212, 227
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 6 cut(s) 29, 150, 346, 892, 908, 1303
HpaII CCGG 6 cut(s) 233, 320, 350, 482, 548, 1227
HphI GGTGA 2 cut(s) 255, 499
Hpy166II GTNNAC 2 cut(s) 100, 673
Hpy188I TCNGA 9 cut(s) 28, 89, 247, 345, 477, 702, 928, 957, 1296
Hpy188III TCNNGA 7 cut(s) 142, 168, 313, 350, 454, 1016, 1064
Hpy8I GTNNAC 2 cut(s) 100, 673
Hpy99I CGWCG 2 cut(s) 101, 158
HpyAV CCTTC 6 cut(s) 347, 526, 639, 705, 1232, 1272
HpyCH4III ACNGT 5 cut(s) 298, 598, 609, 709, 1330
HpyCH4IV ACGT 2 cut(s) 70, 840
HpyCH4V TGCA 7 cut(s) 301, 584, 614, 808, 1052, 1214, 1351
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 1144, 1370
HpyF3I CTNAG 5 cut(s) 244, 327, 569, 990, 1014
HpySE526I ACGT 2 cut(s) 70, 840
Hsp92I GRCGYC 2 cut(s) 63, 227
Hsp92II CATG 5 cut(s) 406, 592, 937, 1351, 1373
HspAI GCGC 3 cut(s) 110, 212, 227
KasI GGCGCC 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 349
KpnI GGTACC 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 274, 729, 952, 1116
LmnI GCTCC 3 cut(s) 241, 254, 630
Lsp1109I GCAGC 1 cut(s) 820
LweI GCATC 4 cut(s) 511, 531, 795, 1201
MabI ACCWGGT 1 cut(s) 1288
MaeI CTAG 2 cut(s) 51, 723
MaeII ACGT 2 cut(s) 70, 840
MaeIII GTNAC 4 cut(s) 261, 635, 736, 1163
MalI GATC 4 cut(s) 276, 731, 954, 1118
MboI GATC 4 cut(s) 274, 729, 952, 1116
MluCI AATT 5 cut(s) 137, 163, 172, 959, 1192
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 902
MmeI TCCRAC 2 cut(s) 354, 1319
MroI TCCGGA 1 cut(s) 349
MseI TTAA 7 cut(s) 200, 291, 384, 557, 1185, 1203, 1341
MspI CCGG 6 cut(s) 233, 320, 350, 482, 548, 1227
MspR9I CCNGG 3 cut(s) 483, 1227, 1290
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 1290
MvnI CGCG 2 cut(s) 110, 212
MwoI GCNNNNNNNGC 3 cut(s) 233, 1144, 1370
NarI GGCGCC 1 cut(s) 227
NciI CCSGG 2 cut(s) 483, 1227
NdeI CATATG 1 cut(s) 1154
NdeII GATC 4 cut(s) 274, 729, 952, 1116
NlaIII CATG 5 cut(s) 406, 592, 937, 1351, 1373
NlaIV GGNNCC 6 cut(s) 133, 228, 237, 1078, 1174, 1220
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 4 cut(s) 261, 635, 736, 1163
NspV TTCGAA 2 cut(s) 176, 530
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 5 cut(s) 29, 150, 346, 892, 1303
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 3 cut(s) 211, 226, 810
PleI GAGTC 1 cut(s) 902
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 902
Psp6I CCWGG 1 cut(s) 1288
PspEI GGTNACC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 1288
PspN4I GGNNCC 6 cut(s) 133, 228, 237, 1078, 1174, 1220
PspPI GGNCC 3 cut(s) 131, 1229, 1292
RsaI GTAC 2 cut(s) 1078, 1273
RsaNI GTAC 2 cut(s) 1077, 1272
SalI GTCGAC 1 cut(s) 98
SaqAI TTAA 7 cut(s) 200, 291, 384, 557, 1185, 1203, 1341
SatI GCNGC 3 cut(s) 210, 225, 809
Sau3AI GATC 4 cut(s) 274, 729, 952, 1116
Sau96I GGNCC 3 cut(s) 131, 1229, 1292
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 3 cut(s) 483, 1227, 1290
SexAI ACCWGGT 1 cut(s) 1288
SfaNI GCATC 4 cut(s) 511, 531, 795, 1201
SfcI CTRYAG 1 cut(s) 1233
SfoI GGCGCC 1 cut(s) 228
SfuI TTCGAA 2 cut(s) 176, 530
SinI GGWCC 3 cut(s) 131, 1229, 1292
SmlI CTYRAG 1 cut(s) 1030
SmoI CTYRAG 1 cut(s) 1030
Sse9I AATT 5 cut(s) 137, 163, 172, 959, 1192
SsiI CCGC 7 cut(s) 108, 210, 224, 240, 431, 654, 1283
SspDI GGCGCC 1 cut(s) 226
SspMI CTAG 2 cut(s) 51, 723
StyD4I CCNGG 3 cut(s) 481, 1225, 1288
TaaI ACNGT 5 cut(s) 298, 598, 609, 709, 1330
TaiI ACGT 2 cut(s) 73, 843
TaqI TCGA 8 cut(s) 99, 176, 183, 312, 409, 530, 762, 1119
TasI AATT 5 cut(s) 137, 163, 172, 959, 1192
TauI GCSGC 2 cut(s) 212, 227
TfiI GAWTC 5 cut(s) 29, 150, 346, 892, 1303
Tru1I TTAA 7 cut(s) 200, 291, 384, 557, 1185, 1203, 1341
Tru9I TTAA 7 cut(s) 200, 291, 384, 557, 1185, 1203, 1341
TscAI CASTG 2 cut(s) 493, 1174
TseFI GTSAC 4 cut(s) 261, 635, 736, 1163
TseI GCWGC 1 cut(s) 808
Tsp45I GTSAC 4 cut(s) 261, 635, 736, 1163
TspDTI ATGAA 1 cut(s) 391
TspGWI ACGGA 3 cut(s) 144, 755, 761
TspRI CASTG 2 cut(s) 493, 1174
Van91I CCANNNNNTGG 1 cut(s) 403
VpaK11BI GGWCC 3 cut(s) 131, 1229, 1292
XapI RAATTY 4 cut(s) 137, 163, 172, 959
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 2 cut(s) 51, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.