Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0029391

Physical Location & Seq

Genomic Coordinates Forward (+)

417290 .. 417770

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGAAGTCCCATATTGCATTGTGAAGGGCAAAGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTTTGTGCTTGACAACAGTCAAGAATGAGGATAAGTTGGAGTTCAGCAAGGTCTTGGAGGCAATCAAGGCCAACTTCAATGACAAGTATGAGGAGTACAGGAAAAAGTGGGGTGGCGGCATCATGGGTTCCAAATCCCAGGCAAAAACTAGGGCGAAGGAGAAGCTCCTTGCGAAAGAAGCTGCGCAAAGGCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

91

Amino Acids

10.12

Weight (kDa)

9.79

Isoelectric Point (pI)

10.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029391)

Species	Orthologous Gene IDs
pyrus_communis	pycom111g00610 pycom14g12690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	238, 254
AluI	AGCT	2 cut(s)	238, 254
AlwI	GGATC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	190, 255
BlsI	GCNGC	2 cut(s)	191, 256
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	2 cut(s)	77, 201
BoxI	GACNNNNGTC	1 cut(s)	89
Bsa29I	ATCGAT	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	212
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	47
BsnI	GGCC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	143
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 140, 251
BstNI	CCWGG	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	4 cut(s)	143, 238, 254, 265
CviKI_1	RGCY	4 cut(s)	143, 238, 254, 265
CviQI	GTAC	1 cut(s)	169
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	13, 162, 197
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	2 cut(s)	190, 255
Fsp4HI	GCNGC	2 cut(s)	190, 255
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	2 cut(s)	190, 255
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	19, 223
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	2 cut(s)	18, 68
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 140, 251
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	243
LpnPI	CCDG	3 cut(s)	157, 197, 224
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	77, 201
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MluCI	AATT	1 cut(s)	268
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	94, 124, 157
MseI	TTAA	2 cut(s)	267, 271
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	3 cut(s)	36, 140, 251
NdeII	GATC	1 cut(s)	44
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	202
NsbI	TGCGCA	1 cut(s)	258
PacI	TTAATTAA	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	191, 256
PshAI	GACNNNNGTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	202
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	267, 271
SatI	GCNGC	2 cut(s)	190, 255
Sau3AI	GATC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	3 cut(s)	126, 240, 256
SfaNI	GCATC	2 cut(s)	77, 201
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	47
TasI	AATT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	267, 271
Tru9I	TTAA	2 cut(s)	267, 271
TseI	GCWGC	1 cut(s)	254
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.