Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0024049

Physical Location & Seq

Genomic Coordinates Reverse (-)

1414522 .. 1415289

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGAAGCACAGACGACTGGAGCAGCTTTTGCGATCTCAAGAGCCAGGATCGAAGATAATAATCTTTTGTTCAACCAAGAAGATGTGCGATCAACTTTCTCGCAACCTAACCCGCCAGTTTGGAGCTGCTGCAATTCATGGCGACAAATCTCAGAGTGAGAGGGATTATGTGTTGAATCAATTTCGCTCTGGAAGGACTCCAATTCTTGTAGCAACTGATGTTGCAGCTCGAGGATTGGACATCAAGGACATAAGGGTGGTTATCAACTACGACTTCCCTACTGGAGTAGAGGATTATGTTCACAGGATTGGGAGAACTGGAAGGGCGGGCGCTACTGGCCTGGCTTACACATTTTTCGGTGATCAGGATGCTAAGTATGCATCGATCTCATCAAAGTTTTGGAAGGGGCTAATCAGCGCGTCCCCCCAGAAGTTCGTGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009628 GO:0009651 GO:0009987 GO:0010501 GO:0016070 GO:0016301 GO:0016310 GO:0016462 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0036211 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046777 GO:0050896 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140096 GO:0140098 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

9.73

Isoelectric Point (pI)

45.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	3 - 111	6e-37	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024049)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g32761 FvH4_2g32761
pyrus_communis	pycom111g02380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	422
AciI	CCGC	2 cut(s)	115, 329
AclWI	GGATC	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	75, 178
AjnI	CCWGG	2 cut(s)	46, 342
AluBI	AGCT	4 cut(s)	28, 128, 230, 444
AluI	AGCT	4 cut(s)	28, 128, 230, 444
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	25, 128, 131, 227
AspLEI	GCGC	2 cut(s)	335, 422
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	37, 115, 118, 239
BciT130I	CCWGG	2 cut(s)	48, 344
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	1 cut(s)	445
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	4 cut(s)	26, 129, 132, 228
BlsI	GCNGC	4 cut(s)	27, 130, 133, 229
Bme1390I	CCNGG	2 cut(s)	48, 344
BmeT110I	CYCGRG	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	48, 344
BmsI	GCATC	2 cut(s)	361, 392
BpmI	CTGGAG	2 cut(s)	41, 306
BpuEI	CTTGAG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	386
BsaBI	GATNNNNATC	1 cut(s)	62
Bse1I	ACTGG	5 cut(s)	24, 118, 289, 325, 343
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	48, 344
BseCI	ATCGAT	1 cut(s)	386
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	5 cut(s)	24, 118, 289, 325, 343
BseXI	GCAGC	4 cut(s)	37, 115, 118, 239
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	35, 50, 91, 364, 387
BspACI	CCGC	2 cut(s)	115, 329
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	422
BspPI	GGATC	1 cut(s)	58
BsrI	ACTGG	5 cut(s)	24, 118, 289, 325, 343
BssMI	GATC	5 cut(s)	35, 50, 91, 364, 387
Bst2UI	CCWGG	2 cut(s)	48, 344
BstAPI	GCANNNNNTGC	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	153, 375
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	422
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 422
BstKTI	GATC	5 cut(s)	38, 53, 94, 367, 390
BstMBI	GATC	5 cut(s)	35, 50, 91, 364, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 339, 380
BstNI	CCWGG	2 cut(s)	48, 344
BstSCI	CCNGG	2 cut(s)	46, 342
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	4 cut(s)	37, 115, 118, 239
Bsu15I	ATCGAT	1 cut(s)	386
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	2 cut(s)	335, 422
ClaI	ATCGAT	1 cut(s)	386
CseI	GACGC	1 cut(s)	411
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	8 cut(s)	28, 46, 128, 230, 342, 347, 412, 444
CviKI_1	RGCY	8 cut(s)	28, 46, 128, 230, 342, 347, 412, 444
DdeI	CTNAG	2 cut(s)	153, 375
DpnI	GATC	5 cut(s)	37, 52, 93, 366, 389
DpnII	GATC	5 cut(s)	35, 50, 91, 364, 387
Eco88I	CYCGRG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	46, 342
EcoT22I	ATGCAT	1 cut(s)	385
FaeI	CATG	1 cut(s)	143
FaiI	YATR	5 cut(s)	141, 171, 254, 300, 381
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	1 cut(s)	139
FauI	CCCGC	2 cut(s)	122, 322
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	26, 129, 132, 228
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	26, 129, 132, 228
FspBI	CTAG	1 cut(s)	445
GlaI	GCGC	2 cut(s)	334, 421
GluI	GCNGC	4 cut(s)	26, 129, 132, 228
GsuI	CTGGAG	2 cut(s)	41, 306
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	342
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	335, 422
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	2 cut(s)	333, 420
HinP1I	GCGC	2 cut(s)	333, 420
HinfI	GANTC	2 cut(s)	178, 199
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	4 cut(s)	41, 192, 368, 439
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	189, 318, 400
HpyCH4V	TGCA	3 cut(s)	134, 227, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 339, 380
HpyF3I	CTNAG	2 cut(s)	153, 375
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	2 cut(s)	333, 420
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	35, 50, 91, 364, 387
LmnI	GCTCC	2 cut(s)	22, 125
Lsp1109I	GCAGC	4 cut(s)	37, 115, 118, 239
LweI	GCATC	2 cut(s)	361, 392
MaeI	CTAG	1 cut(s)	445
MalI	GATC	5 cut(s)	37, 52, 93, 366, 389
MboI	GATC	5 cut(s)	35, 50, 91, 364, 387
MboII	GAAGA	2 cut(s)	67, 94
MluCI	AATT	3 cut(s)	135, 182, 204
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	156, 227, 286
Mph1103I	ATGCAT	1 cut(s)	385
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	48, 344
MvaI	CCWGG	2 cut(s)	48, 344
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	31, 339, 380
NdeII	GATC	5 cut(s)	35, 50, 91, 364, 387
NlaIII	CATG	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	385
PaeR7I	CTCGAG	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	27, 130, 133, 229
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	46, 342
PspGI	CCWGG	2 cut(s)	46, 342
PspXI	VCTCGAGB	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	4 cut(s)	26, 129, 132, 228
Sau3AI	GATC	5 cut(s)	35, 50, 91, 364, 387
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	2 cut(s)	48, 344
SetI	ASST	5 cut(s)	30, 111, 130, 232, 446
SfaNI	GCATC	2 cut(s)	361, 392
Sfr274I	CTCGAG	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	39, 231
SmoI	CTYRAG	2 cut(s)	39, 231
Sse9I	AATT	3 cut(s)	135, 182, 204
SsiI	CCGC	2 cut(s)	115, 329
SspMI	CTAG	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	46, 342
TaqI	TCGA	3 cut(s)	53, 232, 386
TasI	AATT	3 cut(s)	135, 182, 204
TfiI	GAWTC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	25, 128, 131, 227
TspDTI	ATGAA	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	231
XspI	CTAG	1 cut(s)	445
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.