Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0028473

Physical Location & Seq

Genomic Coordinates Reverse (-)

1791353 .. 1791961

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTGTTATCGGTGACTCTGTTGATCAGAACCATTTTGAGTCTCTGCTCTGCCTCTTGTCACAGGAGGAATCCCCTAAAGACATTTACAAGGATTTCGAAGATCACGTCACGACATGGTACTTTCCACAACATGACTTCACCCTTAAGAAATTATGGTCCAAATTTCTCATTGCCGCAGAAGAGAGGATGGTTAATGGTACAGGATCCAGCATTTTCGATTTGCAACTAGACAAAGTCGACGAGAAATGGGCAGAACACCTCCCGGATTTAGACCACGCTATATTCTCAGCTGGGCACTGGTTTAACCAGGTAATGTACCTGCACGAAGGTGGCAACCTCATTGGATGCTTCTACTGCAGTGAACCTAATGTCACCAATTACAACAGTAGCCACATCGTTCACTTGGCGTTTCAAACTGCATTCAAGTACATCATGGATTGCAAGAACTGCAAGGGAGGCCTCCTGACCTTGTTGAGGACATTTGCACCGGCACATTTTGAGGGTGGCGTTTGGAACACCGGTGGGTACTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0071554 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

180

Amino Acids

20.46

Weight (kDa)

5.2

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 179	1e-42	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028473)

Species	Orthologous Gene IDs
malus_domestica	MD09G1037300.v1.1
pyrus_communis	pycom111g02990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	240
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	2 cut(s)	201, 214
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	5 cut(s)	122, 202, 320, 431, 530
AfiI	CCNNNNNNNGG	1 cut(s)	477
AflII	CTTAAG	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	416, 427
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	309
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	1 cut(s)	293
AluI	AGCT	1 cut(s)	293
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	201, 214
AoxI	GGCC	1 cut(s)	460
ApoI	RAATTY	1 cut(s)	164
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AsiGI	ACCGGT	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	26, 133, 367
AsuII	TTCGAA	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	300
BamHI	GGATCC	1 cut(s)	206
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	1 cut(s)	358
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	330
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	266, 311
Bme18I	GGWCC	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	266, 311
BmsI	GCATC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	2 cut(s)	490, 521
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	195, 353
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	521
BsiSI	CCGG	3 cut(s)	266, 491, 522
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	462
Bsp119I	TTCGAA	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	3 cut(s)	25, 103, 206
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	362
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	2 cut(s)	201, 214
BspT104I	TTCGAA	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	490, 521
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	2 cut(s)	490, 521
BssMI	GATC	3 cut(s)	25, 103, 206
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	450
BstBI	TTCGAA	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	195, 353
BstKTI	GATC	3 cut(s)	28, 106, 209
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	25, 103, 206
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 450, 459
BstNI	CCWGG	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	264, 309
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	195, 353
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	2 cut(s)	298, 367
BveI	ACCTGC	1 cut(s)	330
Cfr10I	RCCGGY	2 cut(s)	490, 521
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	5 cut(s)	121, 201, 319, 430, 529
CspAI	ACCGGT	1 cut(s)	521
CviAII	CATG	3 cut(s)	117, 134, 436
CviJI	RGCY	4 cut(s)	5, 293, 393, 462
CviKI_1	RGCY	4 cut(s)	5, 293, 393, 462
CviQI	GTAC	5 cut(s)	121, 201, 319, 430, 529
DdeI	CTNAG	1 cut(s)	289
DpnI	GATC	3 cut(s)	27, 105, 208
DpnII	GATC	3 cut(s)	25, 103, 206
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	120, 137, 439
FaiI	YATR	5 cut(s)	118, 135, 157, 284, 437
FatI	CATG	3 cut(s)	116, 133, 435
FbaI	TGATCA	1 cut(s)	25
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	202, 360
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	3 cut(s)	266, 491, 522
Hin1II	CATG	3 cut(s)	120, 137, 439
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	17, 41, 71
HpaII	CCGG	3 cut(s)	266, 491, 522
HphI	GGTGA	3 cut(s)	26, 133, 367
Hpy166II	GTNNAC	3 cut(s)	241, 365, 403
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	112, 466
Hpy8I	GTNNAC	3 cut(s)	241, 365, 403
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	8 cut(s)	226, 325, 360, 422, 444, 453, 488, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 450, 459
HpyF3I	CTNAG	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	3 cut(s)	120, 137, 439
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 103, 206
LweI	GCATC	1 cut(s)	338
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	4 cut(s)	14, 60, 109, 373
MalI	GATC	3 cut(s)	27, 105, 208
MboI	GATC	3 cut(s)	25, 103, 206
MboII	GAAGA	2 cut(s)	113, 194
MfeI	CAATTG	1 cut(s)	535
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	4 cut(s)	152, 164, 379, 535
MlyI	GAGTC	2 cut(s)	11, 50
MnlI	CCTC	9 cut(s)	61, 65, 180, 272, 350, 452, 471, 473, 496
MseI	TTAA	3 cut(s)	147, 195, 306
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	293
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	3 cut(s)	266, 491, 522
MspR9I	CCNGG	2 cut(s)	266, 311
MunI	CAATTG	1 cut(s)	535
Mva1269I	GAATGC	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	357, 450, 459
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	3 cut(s)	25, 103, 206
NlaIII	CATG	3 cut(s)	120, 137, 439
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	4 cut(s)	14, 60, 109, 373
NspV	TTCGAA	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	330
PceI	AGGCCT	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	422
PfeI	GAWTC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	264
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	2 cut(s)	11, 49
PpsI	GAGTC	2 cut(s)	11, 49
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	206
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	5 cut(s)	122, 202, 320, 431, 530
RsaNI	GTAC	5 cut(s)	121, 201, 319, 430, 529
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	239
SaqAI	TTAA	3 cut(s)	147, 195, 306
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	3 cut(s)	25, 103, 206
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	2 cut(s)	11, 50
ScrFI	CCNGG	2 cut(s)	266, 311
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	9 cut(s)	111, 264, 295, 315, 324, 334, 342, 370, 473
SexAI	ACCWGGT	1 cut(s)	309
SfaNI	GCATC	1 cut(s)	338
SfcI	CTRYAG	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	99
SgrAI	CRCCGGYG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	152, 164, 379, 535
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	177
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	264, 309
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	99, 219, 240
TasI	AATT	4 cut(s)	152, 164, 379, 535
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	147, 195, 306
Tru9I	TTAA	3 cut(s)	147, 195, 306
TscAI	CASTG	2 cut(s)	305, 367
TseFI	GTSAC	4 cut(s)	14, 60, 109, 373
Tsp45I	GTSAC	4 cut(s)	14, 60, 109, 373
TspRI	CASTG	2 cut(s)	305, 367
Tth111I	GACNNNGTC	1 cut(s)	236
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.