pycom111g04320

Belongs to the glycosyltransferase 1 family. Bacterial plant glycogen synthase subfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
Physical Location & Seq
Forward (+)
2619352 .. 2620105
754 bp
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UTR
Exon/CDS
Intron
pycom111g04320.1

Sequence Viewer

Length: 630 bp
ATGGCTTCCATTGGGTCTCTGCATTTTGTCGTAGGGACCAAGCCTGACAACTCTGTGCTCGTTCACAGCAGTACTAATCCCCGGCTCAGATTCCCATTCTTCACGAATCGGCCAAGAAGCTCCATTGAAGTTAGTGGGATCAATGCTTCTGCAAATGGGTCTGCAGGAGCTGCGCGAATGTGCAGAGGACGGATTAGTTGGTGCACAAGAGGGAAAATTTGGAGGATTAAGCCGCTGAGAGCGATCCGAAAGAGCTCGGTGGAAGGTGAGGACGCGGGCGAGCCGGAGGACGCGCTTCAGGCCACCATTGAAAAGAGCAAGAAGGTTCTTGCTGTGCAAAAAGAACTACTGCAACAGATTTCTGAAAGAAGGAAATTGGTATCTTCTATACAAAGTAGTGATATCAGCCAAGAAGAAGAGGAAGCTTCTTTTGAACAAGGGAATGAATCGTTTTTGAATGCGGAAAGTTCTTCAAGTGGTGTTGATAAAAGTGTTGACCAAATTGGCAGCATTGTTTCAAGCAGCTATGAGCATTCAACTGAAGAAAAGGATTTTGAAACTGTGCCTTCTGCTTTTAGTGGAGGGCTTGATGAAATAGAAAAGGATCGATGGAGATGCTTTACCGTTTGA

Protein Analysis

210

Amino Acids

22.96

Weight (kDa)

5.75

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0029396)

Species Orthologous Gene IDs
pyrus_communis pycom111g04320 pycom17g04710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 175, 275, 293
AciI CCGC 3 cut(s) 233, 275, 461
AclWI GGATC 3 cut(s) 146, 238, 612
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 2 cut(s) 281, 561
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 8 cut(s) 128, 311, 434, 457, 474, 519, 537, 557
AluBI AGCT 5 cut(s) 120, 170, 255, 425, 525
AluI AGCT 5 cut(s) 120, 170, 255, 425, 525
Alw21I GWGCWC 3 cut(s) 60, 206, 257
Alw26I GTCTC 1 cut(s) 21
Alw44I GTGCAC 1 cut(s) 202
AlwI GGATC 3 cut(s) 146, 238, 612
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 2 cut(s) 110, 300
ApaLI GTGCAC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 170, 507, 522
ApoI RAATTY 1 cut(s) 216
AspLEI GCGC 2 cut(s) 175, 295
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 257
Bbv12I GWGCWC 3 cut(s) 60, 206, 257
BbvI GCAGC 3 cut(s) 157, 519, 534
BccI CCATC 1 cut(s) 603
BcgI CGANNNNNNTGC 1 cut(s) 597
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 21
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 4 cut(s) 171, 233, 508, 523
BlsI GCNGC 4 cut(s) 172, 234, 509, 524
BmcAI AGTACT 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 607
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 1 cut(s) 80
BseMII CTCAG 2 cut(s) 100, 227
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 3 cut(s) 157, 519, 534
BsgI GTGCAG 1 cut(s) 202
Bsh1236I CGCG 3 cut(s) 175, 275, 293
BshFI GGCC 2 cut(s) 112, 302
BshVI ATCGAT 1 cut(s) 607
BsiHKAI GWGCWC 3 cut(s) 60, 206, 257
BsiSI CCGG 2 cut(s) 82, 284
BslFI GGGAC 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 49
BsmI GAATGC 2 cut(s) 463, 532
BsnI GGCC 2 cut(s) 112, 302
Bso31I GGTCTC 1 cut(s) 21
Bsp1286I GDGCHC 3 cut(s) 60, 206, 257
Bsp143I GATC 3 cut(s) 138, 243, 604
BspACI CCGC 3 cut(s) 233, 275, 461
BspANI GGCC 2 cut(s) 112, 302
BspCNI CTCAG 2 cut(s) 99, 228
BspDI ATCGAT 1 cut(s) 607
BspFNI CGCG 3 cut(s) 175, 275, 293
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 3 cut(s) 146, 238, 612
BspTNI GGTCTC 1 cut(s) 21
BssECI CCNNGG 1 cut(s) 80
BssMI GATC 3 cut(s) 138, 243, 604
Bst4CI ACNGT 2 cut(s) 562, 625
Bst6I CTCTTC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 277, 281
BstDEI CTNAG 2 cut(s) 86, 236
BstFNI CGCG 3 cut(s) 175, 275, 293
BstHHI GCGC 2 cut(s) 175, 295
BstKTI GATC 3 cut(s) 141, 246, 607
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 3 cut(s) 138, 243, 604
BstMWI GCNNNNNNNGC 2 cut(s) 170, 299
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 206
BstUI CGCG 3 cut(s) 175, 275, 293
BstV1I GCAGC 3 cut(s) 157, 519, 534
Bsu15I ATCGAT 1 cut(s) 607
BsuRI GGCC 2 cut(s) 112, 302
BsuTUI ATCGAT 1 cut(s) 607
Cac8I GCNNGC 2 cut(s) 277, 281
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 2 cut(s) 175, 295
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 607
CseI GACGC 2 cut(s) 281, 299
Csp6I GTAC 1 cut(s) 72
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 86, 236
DpnI GATC 3 cut(s) 140, 245, 606
DpnII GATC 3 cut(s) 138, 243, 604
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 257
Eco31I GGTCTC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 255
Eco57I CTGAAG 2 cut(s) 281, 561
EcoICRI GAGCTC 1 cut(s) 255
EcoRV GATATC 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 257
FaiI YATR 2 cut(s) 389, 528
FaqI GGGAC 1 cut(s) 49
FauI CCCGC 1 cut(s) 268
Fnu4HI GCNGC 4 cut(s) 171, 233, 508, 523
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 171, 233, 508, 523
GlaI GCGC 2 cut(s) 174, 294
GluI GCNGC 4 cut(s) 171, 233, 508, 523
HaeIII GGCC 2 cut(s) 112, 302
HapII CCGG 2 cut(s) 82, 284
HgaI GACGC 2 cut(s) 281, 299
HhaI GCGC 2 cut(s) 175, 295
Hin6I GCGC 2 cut(s) 173, 293
HinP1I GCGC 2 cut(s) 173, 293
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 90, 106, 446
HpaII CCGG 2 cut(s) 82, 284
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 3 cut(s) 64, 204, 496
Hpy188I TCNGA 3 cut(s) 89, 248, 364
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 3 cut(s) 64, 204, 496
HpyAV CCTTC 4 cut(s) 257, 316, 363, 576
HpyCH4III ACNGT 2 cut(s) 562, 625
HpyCH4V TGCA 7 cut(s) 22, 152, 164, 183, 204, 337, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 299
HpyF3I CTNAG 2 cut(s) 86, 236
HspAI GCGC 2 cut(s) 173, 293
Kzo9I GATC 3 cut(s) 138, 243, 604
LmnI GCTCC 2 cut(s) 125, 167
LpnPI CCDG 5 cut(s) 57, 95, 150, 284, 297
Lsp1109I GCAGC 3 cut(s) 157, 519, 534
LweI GCATC 1 cut(s) 605
MalI GATC 3 cut(s) 140, 245, 606
MboI GATC 3 cut(s) 138, 243, 604
MboII GAAGA 6 cut(s) 91, 375, 425, 428, 462, 554
MhlI GDGCHC 3 cut(s) 60, 206, 257
MluCI AATT 3 cut(s) 216, 374, 501
MnlI CCTC 7 cut(s) 179, 203, 216, 262, 280, 412, 575
MseI TTAA 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 2 cut(s) 82, 284
MspR9I CCNGG 1 cut(s) 82
Mva1269I GAATGC 2 cut(s) 463, 532
MvnI CGCG 3 cut(s) 175, 275, 293
MwoI GCNNNNNNNGC 2 cut(s) 170, 299
NciI CCSGG 1 cut(s) 82
NdeII GATC 3 cut(s) 138, 243, 604
NlaIV GGNNCC 1 cut(s) 37
PctI GAATGC 2 cut(s) 463, 532
PfeI GAWTC 3 cut(s) 90, 106, 446
PkrI GCNGC 4 cut(s) 172, 234, 509, 524
Psp124BI GAGCTC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 4 cut(s) 171, 233, 508, 523
Sau3AI GATC 3 cut(s) 138, 243, 604
Sau96I GGNCC 1 cut(s) 36
ScaI AGTACT 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 3 cut(s) 60, 206, 257
SetI ASST 7 cut(s) 122, 172, 257, 268, 327, 427, 527
SfaNI GCATC 1 cut(s) 605
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 36
Sse9I AATT 3 cut(s) 216, 374, 501
SsiI CCGC 3 cut(s) 233, 275, 461
SstI GAGCTC 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 562, 625
TaqI TCGA 1 cut(s) 607
TasI AATT 3 cut(s) 216, 374, 501
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 90, 106, 446
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 3 cut(s) 170, 507, 522
TspDTI ATGAA 2 cut(s) 459, 606
TspGWI ACGGA 1 cut(s) 205
VneI GTGCAC 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.