pycom11g03160

DEAD-box ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0028789
Physical Location & Seq
Reverse (-)
2432659 .. 2432871
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGGATACAAAGAAAGGATGTGAATCACATGATCAGATCGCCCTGCAGCTTTGCACGGACGGTCAGCACGCAGTCTCGTTTCATGAAAACAAAAGTCAAGCGGAAAGGGTCGGTATTGCCTCTGAGTTTCAAGCTGGCAAGATCCCCATAATGATTGCAACAGATGTAGCCACTAGTGTTCTAGGTATCAATAGAATTTCTCTTAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05202 ko05205 map03040 map05202 map05205
Pfam Domains
Protein Families
Helicase_C

Protein Analysis

71

Amino Acids

7.51

Weight (kDa)

5.8

Isoelectric Point (pI)

20.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 15 - 65 3.3e-06 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028789)

Species Orthologous Gene IDs
malus_domestica MD17G1169000.v1.1
pyrus_communis pycom11g03160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 136
AcsI RAATTY 1 cut(s) 195
AgsI TTSAA 1 cut(s) 131
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 2 cut(s) 49, 134
AluI AGCT 2 cut(s) 49, 134
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 195
BbvI GCAGC 1 cut(s) 58
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 79
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 182
BfmI CTRYAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 22
Bse8I GATNNNNATC 1 cut(s) 22
BseGI GGATG 1 cut(s) 23
BseJI GATNNNNATC 1 cut(s) 22
BseMII CTCAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 31, 36, 141
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 48
BspPI GGATC 1 cut(s) 136
BssMI GATC 3 cut(s) 31, 36, 141
Bst4CI ACNGT 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 69, 136
BstDEI CTNAG 2 cut(s) 123, 203
BstF5I GGATG 1 cut(s) 23
BstKTI GATC 3 cut(s) 34, 39, 144
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 3 cut(s) 31, 36, 141
BstSFI CTRYAG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BtsCI GGATG 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 69, 136
CciI TCATGA 1 cut(s) 82
CviAII CATG 2 cut(s) 29, 83
CviJI RGCY 3 cut(s) 49, 134, 170
CviKI_1 RGCY 3 cut(s) 49, 134, 170
DdeI CTNAG 2 cut(s) 123, 203
DpnI GATC 3 cut(s) 33, 38, 143
DpnII GATC 3 cut(s) 31, 36, 141
FaeI CATG 2 cut(s) 32, 86
FaiI YATR 3 cut(s) 30, 84, 149
FatI CATG 2 cut(s) 28, 82
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 2 cut(s) 174, 182
GluI GCNGC 1 cut(s) 47
Hin1II CATG 2 cut(s) 32, 86
HinfI GANTC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 36, 124
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4V TGCA 3 cut(s) 46, 54, 158
HpyF3I CTNAG 2 cut(s) 123, 203
Hsp92II CATG 2 cut(s) 32, 86
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 36, 141
LpnPI CCDG 2 cut(s) 56, 120
Lsp1109I GCAGC 1 cut(s) 58
MaeI CTAG 2 cut(s) 174, 182
MalI GATC 3 cut(s) 33, 38, 143
MboI GATC 3 cut(s) 31, 36, 141
MflI RGATCY 1 cut(s) 141
MluCI AATT 1 cut(s) 195
MnlI CCTC 1 cut(s) 130
NdeII GATC 3 cut(s) 31, 36, 141
NlaIII CATG 2 cut(s) 32, 86
PagI TCATGA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 48
PstI CTGCAG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 141
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 31, 36, 141
SetI ASST 3 cut(s) 51, 136, 187
SfcI CTRYAG 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 1 cut(s) 195
SsiI CCGC 1 cut(s) 101
SspMI CTAG 2 cut(s) 174, 182
TaaI ACNGT 1 cut(s) 62
TasI AATT 1 cut(s) 195
TfiI GAWTC 1 cut(s) 23
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 71, 99
TspGWI ACGGA 1 cut(s) 71
XapI RAATTY 1 cut(s) 195
XspI CTAG 2 cut(s) 174, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.