Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0024489

Physical Location & Seq

Genomic Coordinates Reverse (-)

4465080 .. 4467217

Gene Structure 2138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGTCGAGCACCGATCCCAAACACAGAGACCTCGTGGAGTCCCCACTCGCTGGCGACGACGATGCCATCCGATCTCAAACCTATCGTCTGGTTGCCATCATGCACAGAGATCTCTTATATTACCAAACACAAACACTAACATATGTGACCATGTTGGCTGGAGACTATGACGAGGCTTTGATCGGTGCGGTTGGGTTGGTCAAGGGCTTGAAAAAAGTGACGAGCCAATACCCGCTGGTTGTGGCTGTCTTGCCGGATGTGTCTGAAAAAGATCGCAAGCTTCTGGCCTCCCATGGCTGCATAGTGAAAGAGATTGAGCCTGTGATCATGGCCTCATATCTTGAGGAGTATGACAAAATGATCTACTTGGACGTTTTCGTCCAAGTCTTTGAGAACATTGACCACATGTTTGATTACCCTGACTCCTACTTCTATGCGACGCTGGACTGCTTCTGCGAGAAGTCTTGGAGCCACAGCCCACAGCACAAGATTGGGTACTGCCAGCAATGGCCAAACATGGTCCAGATGGACCCCACATTGGGCCCCAAGCCTCCTCTTTACTTCAATGCTAGCATGTTTGTGTTTGAGCCCAGCTCGGTGACCTACCGTGACCTCGTCAAAACCCTGCAGACTTCTCGTACTACCGCTTTTGCAGAGCAGGATCTTCTGAACGTGGTTTTCAAGGACAAGTTGGTGGCCCTGGCTCCACATTACAACCTTTTGCTGCCCATGCTCTGGCGTCACCCAGAGGCCGTTGAGCTTGACAGGGTCAAAGTTGTTAACTATTGTGCTAATGGGTCTAAGCCATGGACTTACACTGGGAAGGAAGAGAACATGGAGAGGGAAGATGTTAAGATGCTGGTGAACAAATGGGAGGAAATATACAGTGATGACTCTTTGGACTACAAGGAGACTCTGACTTCAGCTGAGGTTGAGAAGGGCACAGACCAAGTTAACGTGAATCCATCCGAAGCGGCGTTTTCCGAGACTGGCGCTGTCGAATTCATCTCCGGCCCATCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

343

Amino Acids

38.92

Weight (kDa)

4.76

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	110 - 273	8.1e-20	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024489)

Species	Orthologous Gene IDs
malus_domestica	MD11G1070000.v1.1
pyrus_communis	pycom11g05820 pycom11g05850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	377
AccB7I	CCANNNNNTGG	2 cut(s)	50, 735
AciI	CCGC	4 cut(s)	188, 233, 645, 974
AclWI	GGATC	2 cut(s)	8, 669
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	1001
AcuI	CTGAAG	1 cut(s)	906
AcyI	GRCGYC	1 cut(s)	739
AfaI	GTAC	2 cut(s)	497, 640
AfiI	CCNNNNNNNGG	4 cut(s)	50, 538, 539, 735
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	3 cut(s)	211, 565, 682
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	4 cut(s)	280, 594, 760, 926
AluI	AGCT	4 cut(s)	280, 594, 760, 926
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	4 cut(s)	21, 156, 905, 980
AlwI	GGATC	2 cut(s)	8, 669
AoxI	GGCC	7 cut(s)	285, 330, 509, 541, 696, 750, 1012
ApaI	GGGCCC	1 cut(s)	545
ApeKI	GCWGC	3 cut(s)	297, 724, 1022
ApoI	RAATTY	1 cut(s)	1001
ArsI	GACNNNNNNTTYG	4 cut(s)	70, 102, 392, 424
AspLEI	GCGC	1 cut(s)	995
AspS9I	GGNCC	6 cut(s)	520, 529, 541, 542, 697, 1013
AsuHPI	GGTGA	3 cut(s)	610, 734, 874
AsuNHI	GCTAGC	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	520, 529
BaeGI	GKGCMC	2 cut(s)	545, 944
BalI	TGGCCA	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	545, 591
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	927
BbvI	GCAGC	3 cut(s)	284, 711, 1009
BccI	CCATC	5 cut(s)	74, 104, 520, 973, 1024
BceAI	ACGGC	1 cut(s)	737
BcgI	CGANNNNNNTGC	4 cut(s)	44, 78, 617, 651
BciT130I	CCWGG	1 cut(s)	701
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	21, 156, 905, 980
BfaI	CTAG	1 cut(s)	570
BfmI	CTRYAG	1 cut(s)	626
BfoI	RGCGCY	1 cut(s)	996
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	4 cut(s)	298, 725, 975, 1023
BlsI	GCNGC	4 cut(s)	299, 726, 976, 1024
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	2 cut(s)	520, 529
BmgT120I	GGNCC	6 cut(s)	520, 529, 541, 542, 697, 1013
BmiI	GGNNCC	5 cut(s)	470, 531, 543, 544, 705
BmrFI	CCNGG	1 cut(s)	701
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	2 cut(s)	52, 846
BmtI	GCTAGC	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	927
BpuEI	CTTGAG	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	739
BsaI	GGTCTC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	292, 699, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 538, 539, 735
Bse1I	ACTGG	2 cut(s)	823, 994
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	3 cut(s)	292, 699, 806
BseGI	GGATG	3 cut(s)	66, 262, 965
BseLI	CCNNNNNNNGG	4 cut(s)	50, 538, 539, 735
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	2 cut(s)	823, 994
BseRI	GAGGAG	2 cut(s)	359, 543
BseSI	GKGCMC	2 cut(s)	545, 944
BseXI	GCAGC	3 cut(s)	284, 711, 1009
BseYI	CCCAGC	1 cut(s)	590
BshFI	GGCC	7 cut(s)	287, 332, 511, 543, 698, 752, 1014
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	254, 1011
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	4 cut(s)	50, 538, 539, 735
BsmAI	GTCTC	4 cut(s)	21, 156, 905, 980
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	7 cut(s)	287, 332, 511, 543, 698, 752, 1014
Bso31I	GGTCTC	1 cut(s)	21
Bsp120I	GGGCCC	1 cut(s)	541
Bsp1286I	GDGCHC	4 cut(s)	11, 545, 591, 944
Bsp143I	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
Bsp19I	CCATGG	2 cut(s)	292, 806
BspACI	CCGC	4 cut(s)	188, 233, 645, 974
BspANI	GGCC	7 cut(s)	287, 332, 511, 543, 698, 752, 1014
BspCNI	CTCAG	1 cut(s)	919
BspLI	GGNNCC	5 cut(s)	470, 531, 543, 544, 705
BspMAI	CTGCAG	1 cut(s)	630
BspOI	GCTAGC	1 cut(s)	573
BspPI	GGATC	2 cut(s)	8, 669
BspTNI	GGTCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	823, 994
BssECI	CCNNGG	3 cut(s)	292, 699, 806
BssMI	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
BssNI	GRCGYC	1 cut(s)	739
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	292, 806
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	2 cut(s)	608, 887
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	1 cut(s)	739
BstC8I	GCNNGC	4 cut(s)	52, 278, 503, 571
BstDEI	CTNAG	2 cut(s)	801, 927
BstDSI	CCRYGG	2 cut(s)	292, 806
BstEII	GGTNACC	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	66, 262, 965
BstH2I	RGCGCY	1 cut(s)	996
BstHHI	GCGC	1 cut(s)	995
BstKTI	GATC	8 cut(s)	16, 74, 112, 183, 274, 327, 363, 664
BstMAI	GTCTC	4 cut(s)	21, 156, 905, 980
BstMBI	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	730
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	2 cut(s)	409, 577
BstPI	GGTNACC	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	626
BstSLI	GKGCMC	2 cut(s)	545, 944
BstV1I	GCAGC	3 cut(s)	284, 711, 1009
BstX2I	RGATCY	2 cut(s)	109, 661
BstYI	RGATCY	2 cut(s)	109, 661
BsuRI	GGCC	7 cut(s)	287, 332, 511, 543, 698, 752, 1014
BtgI	CCRYGG	2 cut(s)	292, 806
BtsCI	GGATG	3 cut(s)	66, 262, 965
BtsIMutI	CAGTG	2 cut(s)	816, 892
Cac8I	GCNNGC	4 cut(s)	52, 278, 503, 571
CfoI	GCGC	1 cut(s)	995
Cfr13I	GGNCC	6 cut(s)	520, 529, 541, 542, 697, 1013
CseI	GACGC	2 cut(s)	448, 728
Csp6I	GTAC	2 cut(s)	496, 639
CviQI	GTAC	2 cut(s)	496, 639
DdeI	CTNAG	2 cut(s)	801, 927
DpnI	GATC	8 cut(s)	15, 73, 111, 182, 273, 326, 362, 663
DpnII	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	292, 806
Eco24I	GRGCYC	2 cut(s)	545, 591
Eco31I	GGTCTC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	520, 529
Eco57I	CTGAAG	1 cut(s)	906
Eco91I	GGTNACC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	542
EcoO65I	GGTNACC	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	1001
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	2 cut(s)	292, 806
EcoT38I	GRGCYC	2 cut(s)	545, 591
ErhI	CCWWGG	2 cut(s)	292, 806
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	298, 725, 975, 1023
FokI	GGATG	3 cut(s)	53, 269, 952
FriOI	GRGCYC	2 cut(s)	545, 591
Fsp4HI	GCNGC	4 cut(s)	298, 725, 975, 1023
FspBI	CTAG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	994
GluI	GCNGC	4 cut(s)	298, 725, 975, 1023
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	996
HaeIII	GGCC	7 cut(s)	287, 332, 511, 543, 698, 752, 1014
HapII	CCGG	2 cut(s)	254, 1011
HgaI	GACGC	2 cut(s)	448, 728
HhaI	GCGC	1 cut(s)	995
Hin1I	GRCGYC	1 cut(s)	739
Hin6I	GCGC	1 cut(s)	993
HinP1I	GCGC	1 cut(s)	993
HincII	GTYRAC	2 cut(s)	781, 955
HindII	GTYRAC	2 cut(s)	781, 955
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	5 cut(s)	38, 422, 893, 913, 961
HpaI	GTTAAC	2 cut(s)	781, 955
HpaII	CCGG	2 cut(s)	254, 1011
HphI	GGTGA	3 cut(s)	610, 734, 874
Hpy166II	GTNNAC	3 cut(s)	781, 865, 955
Hpy188I	TCNGA	6 cut(s)	71, 265, 669, 918, 970, 985
Hpy188III	TCNNGA	2 cut(s)	341, 523
Hpy8I	GTNNAC	3 cut(s)	781, 865, 955
Hpy99I	CGWCG	3 cut(s)	59, 62, 442
HpyAV	CCTTC	2 cut(s)	817, 931
HpyCH4III	ACNGT	2 cut(s)	608, 887
HpyCH4IV	ACGT	3 cut(s)	372, 672, 957
HpyCH4V	TGCA	4 cut(s)	103, 300, 628, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	730
HpyF3I	CTNAG	2 cut(s)	801, 927
HpySE526I	ACGT	3 cut(s)	372, 672, 957
Hsp92I	GRCGYC	1 cut(s)	739
HspAI	GCGC	1 cut(s)	993
Ksp22I	TGATCA	1 cut(s)	324
KspAI	GTTAAC	2 cut(s)	781, 955
Kzo9I	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
LmnI	GCTCC	2 cut(s)	468, 709
Lsp1109I	GCAGC	3 cut(s)	284, 711, 1009
LweI	GCATC	2 cut(s)	52, 846
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	3 cut(s)	372, 672, 957
MaeIII	GTNAC	5 cut(s)	145, 217, 598, 608, 740
MalI	GATC	8 cut(s)	15, 73, 111, 182, 273, 326, 362, 663
MboI	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
MboII	GAAGA	3 cut(s)	656, 839, 857
MflI	RGATCY	2 cut(s)	109, 661
MhlI	GDGCHC	4 cut(s)	11, 545, 591, 944
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	1 cut(s)	1001
MluNI	TGGCCA	1 cut(s)	511
MlyI	GAGTC	4 cut(s)	47, 416, 887, 907
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	3 cut(s)	780, 852, 954
MslI	CAYNNNNRTG	1 cut(s)	578
Msp20I	TGGCCA	1 cut(s)	511
MspA1I	CMGCKG	2 cut(s)	235, 926
MspI	CCGG	2 cut(s)	254, 1011
MspR9I	CCNGG	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	1 cut(s)	730
NcoI	CCATGG	2 cut(s)	292, 806
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
NheI	GCTAGC	1 cut(s)	569
NlaIV	GGNNCC	5 cut(s)	470, 531, 543, 544, 705
NmuCI	GTSAC	5 cut(s)	145, 217, 598, 608, 740
NspI	RCATGY	2 cut(s)	409, 577
PciI	ACATGT	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	961
PflFI	GACNNNGTC	2 cut(s)	614, 767
PflMI	CCANNNNNTGG	2 cut(s)	50, 735
PkrI	GCNGC	4 cut(s)	299, 726, 976, 1024
PleI	GAGTC	4 cut(s)	46, 416, 887, 907
PpsI	GAGTC	4 cut(s)	46, 416, 887, 907
PscI	ACATGT	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	699
PspEI	GGTNACC	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	5 cut(s)	470, 531, 543, 544, 705
PspOMI	GGGCCC	1 cut(s)	541
PspPI	GGNCC	6 cut(s)	520, 529, 541, 542, 697, 1013
PstI	CTGCAG	1 cut(s)	630
PsuI	RGATCY	2 cut(s)	109, 661
PsyI	GACNNNGTC	2 cut(s)	614, 767
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	2 cut(s)	497, 640
RsaNI	GTAC	2 cut(s)	496, 639
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	3 cut(s)	780, 852, 954
SatI	GCNGC	4 cut(s)	298, 725, 975, 1023
Sau3AI	GATC	8 cut(s)	13, 71, 109, 180, 271, 324, 360, 661
Sau96I	GGNCC	6 cut(s)	520, 529, 541, 542, 697, 1013
SchI	GAGTC	4 cut(s)	47, 416, 887, 907
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	4 cut(s)	11, 545, 591, 944
SfaNI	GCATC	2 cut(s)	52, 846
SfcI	CTRYAG	1 cut(s)	626
SinI	GGWCC	2 cut(s)	520, 529
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	1001
SsiI	CCGC	4 cut(s)	188, 233, 645, 974
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	2 cut(s)	292, 806
TaaI	ACNGT	2 cut(s)	608, 887
TaiI	ACGT	3 cut(s)	375, 675, 960
TaqI	TCGA	2 cut(s)	5, 999
TasI	AATT	1 cut(s)	1001
TauI	GCSGC	1 cut(s)	977
TfiI	GAWTC	1 cut(s)	961
Tru1I	TTAA	3 cut(s)	780, 852, 954
Tru9I	TTAA	3 cut(s)	780, 852, 954
TscAI	CASTG	2 cut(s)	823, 892
TseFI	GTSAC	5 cut(s)	145, 217, 598, 608, 740
TseI	GCWGC	3 cut(s)	297, 724, 1022
Tsp45I	GTSAC	5 cut(s)	145, 217, 598, 608, 740
TspDTI	ATGAA	1 cut(s)	994
TspRI	CASTG	2 cut(s)	823, 892
Tth111I	GACNNNGTC	2 cut(s)	614, 767
Van91I	CCANNNNNTGG	2 cut(s)	50, 735
VpaK11BI	GGWCC	2 cut(s)	520, 529
XapI	RAATTY	1 cut(s)	1001
XceI	RCATGY	2 cut(s)	409, 577
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.