Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0024679

Physical Location & Seq

Genomic Coordinates Forward (+)

6333973 .. 6336223

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATTTTCACTCGGATTGGTCGCTCCGTTTCTCGATCTTCTAGCTCCAGCAATTTGTTGAATGGAAGTGGGCGATCGGCGGGTCTGATTGGGAATGGAGGGACTTCTGGAGTTCCGCGTTTTGGTTCGTATCTGGGTCCGGTCGATGGGGAATTAGGGTTTTTGAGGTCGTATTTTGCTGCGTCAATAGCAGCCCACAAGGCCTGCGTTTCGGATTTCAGTGGCATTCTTGCAAACCCTAAACTTTGCCGACACTTTTCGAGTGAAACCCCAAAGAAAAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAATTCCGAAAGGGGATGAGCAGAAATCGGAGTCTAAAGACGAATCAAAGACAAATGATCAGGGGAGTTTTCAGGAAACTTTCTTGAGGCAGTTTCAAAGTTTAATCACCCCACTATTGGTCATTGGGCTATTTCTTTCCTCCTTCTCCTTTGGTTCTCCTGATCAGCAACAGATAAGTTTCCAAGAGTTTAAAAACAAACTTCTGGAACCAGGCTTAGTGGATCGATATAGTTGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

186

Amino Acids

20.34

Weight (kDa)

9.13

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024679)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g08200
rosa_multiflora	Rmu_sc0016934.1_g000003 Rmu_sc0025019.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	2 cut(s)	80, 116
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	318
AfiI	CCNNNNNNNGG	3 cut(s)	122, 146, 433
AgsI	TTSAA	2 cut(s)	61, 413
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	179, 191
ApoI	RAATTY	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	166, 203
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	2 cut(s)	373, 478
BfaI	CTAG	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	2 cut(s)	180, 192
BlsI	GCNGC	2 cut(s)	181, 193
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	138, 525
BmrFI	CCNGG	1 cut(s)	528
BpmI	CTGGAG	2 cut(s)	31, 129
BpuEI	CTTGAG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	303
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	3 cut(s)	122, 146, 433
BseBI	CCWGG	1 cut(s)	528
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	3 cut(s)	122, 146, 433
BseXI	GCAGC	2 cut(s)	166, 203
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	2 cut(s)	77, 144
BshFI	GGCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	541
BsiEI	CGRYCG	2 cut(s)	77, 144
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	122, 146, 433
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	5 cut(s)	35, 74, 373, 478, 538
BspACI	CCGC	2 cut(s)	80, 116
BspANI	GGCC	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	138, 525
BspPI	GGATC	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	5 cut(s)	35, 74, 373, 478, 538
BssT1I	CCWWGG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	532
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	118
BstKTI	GATC	5 cut(s)	38, 77, 376, 481, 541
BstMBI	GATC	5 cut(s)	35, 74, 373, 478, 538
BstMCI	CGRYCG	2 cut(s)	77, 144
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 200
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	166, 203
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	541
BtsCI	GGATG	1 cut(s)	337
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	137
ClaI	ATCGAT	1 cut(s)	541
CseI	GACGC	1 cut(s)	171
CviJI	RGCY	5 cut(s)	45, 194, 203, 445, 531
CviKI_1	RGCY	5 cut(s)	45, 194, 203, 445, 531
DdeI	CTNAG	1 cut(s)	532
DpnI	GATC	5 cut(s)	37, 76, 375, 480, 540
DpnII	GATC	5 cut(s)	35, 74, 373, 478, 538
DraI	TTTAAA	1 cut(s)	508
Eco130I	CCWWGG	1 cut(s)	303
Eco147I	AGGCCT	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaiI	YATR	2 cut(s)	288, 546
FaqI	GGGAC	1 cut(s)	115
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	2 cut(s)	373, 478
Fnu4HI	GCNGC	2 cut(s)	180, 192
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	180, 192
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	2 cut(s)	180, 192
GsuI	CTGGAG	2 cut(s)	31, 129
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	140
HgaI	GACGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	347, 359
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	1 cut(s)	415
Hpy188I	TCNGA	5 cut(s)	15, 87, 214, 324, 346
Hpy188III	TCNNGA	6 cut(s)	33, 108, 389, 400, 476, 521
HpyAV	CCTTC	2 cut(s)	307, 469
HpyCH4V	TGCA	1 cut(s)	233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 200
HpyF3I	CTNAG	1 cut(s)	532
Ksp22I	TGATCA	2 cut(s)	373, 478
Kzo9I	GATC	5 cut(s)	35, 74, 373, 478, 538
LmnI	GCTCC	2 cut(s)	29, 50
Lsp1109I	GCAGC	2 cut(s)	166, 203
MaeI	CTAG	1 cut(s)	42
MalI	GATC	5 cut(s)	37, 76, 375, 480, 540
MboI	GATC	5 cut(s)	35, 74, 373, 478, 538
MboII	GAAGA	1 cut(s)	30
MluCI	AATT	4 cut(s)	52, 152, 283, 318
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	4 cut(s)	92, 159, 396, 466
MseI	TTAA	2 cut(s)	419, 507
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	188, 200
NdeII	GATC	5 cut(s)	35, 74, 373, 478, 538
NlaIV	GGNNCC	2 cut(s)	138, 525
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	181, 193
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	138, 525
PspPI	GGNCC	1 cut(s)	137
PvuI	CGATCG	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	419, 507
SatI	GCNGC	2 cut(s)	180, 192
Sau3AI	GATC	5 cut(s)	35, 74, 373, 478, 538
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	2 cut(s)	47, 170
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	4 cut(s)	52, 152, 283, 318
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	2 cut(s)	80, 116
SspMI	CTAG	1 cut(s)	42
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	1 cut(s)	303
TaqI	TCGA	4 cut(s)	34, 144, 260, 541
TasI	AATT	4 cut(s)	52, 152, 283, 318
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	419, 507
Tru9I	TTAA	2 cut(s)	419, 507
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	179, 191
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	318
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.