Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016934.1

Orthogroup ID

OG0024679

Physical Location & Seq

Genomic Coordinates Forward (+)

16533 .. 17120

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016934.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgattttttcaaggattggtcgctccttatctcgatcctctcgctccaggaatttgctttctcggaatgggcgatcggcggcggctgaagggcttttgggagtaccgggttcgggttcgtatctgggtcgggtcgatggggatttagggtttatgaggacctatattgcttcggcaataggagcgcacaagacccatgtttctgatttgagttacattctagggaaccctaaatttgtgagactgttttccagtgaagcccctaagaaaaagaattttgagaacttctatcccaaggaaaagaaagaaatcccaaaagggaatgatcagaaatccgagtccaaaggtaaatcttttttagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042623 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FtsH_ext Peptidase_M41

Protein Analysis

121

Amino Acids

13.27

Weight (kDa)

10.32

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024679)

Species	Orthologous Gene IDs
pyrus_communis	pycom11g08200
rosa_multiflora	Rmu_sc0016934.1_g000003 Rmu_sc0025019.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 83
AclWI	GGATC	1 cut(s)	30
AcsI	RAATTY	3 cut(s)	52, 233, 274
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	362
AluI	AGCT	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	30
ApoI	RAATTY	3 cut(s)	52, 233, 274
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	159
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	49
BclI	TGATCA	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	2 cut(s)	49, 108
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	2 cut(s)	49, 108
BpmI	CTGGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	252
Bsh1285I	CGRYCG	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	35, 74, 325
BspACI	CCGC	2 cut(s)	80, 83
BspLI	GGNNCC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	30
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	35, 74, 325
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	246
BstDEI	CTNAG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	3 cut(s)	38, 77, 328
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	35, 74, 325
BstMCI	CGRYCG	1 cut(s)	77
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	47, 106
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	4 cut(s)	86, 94, 260, 362
CviKI_1	RGCY	4 cut(s)	86, 94, 260, 362
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	3 cut(s)	37, 76, 327
DpnII	GATC	3 cut(s)	35, 74, 325
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	155, 165, 198
FatI	CATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	81, 84
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	81, 84
GsuI	CTGGAG	1 cut(s)	31
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	107
Hpy188I	TCNGA	4 cut(s)	66, 205, 330, 337
Hpy188III	TCNNGA	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	35, 74, 325
LmnI	GCTCC	3 cut(s)	29, 50, 182
LpnPI	CCDG	5 cut(s)	34, 61, 110, 120, 265
MaeI	CTAG	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	3 cut(s)	37, 76, 327
MboI	GATC	3 cut(s)	35, 74, 325
MluCI	AATT	3 cut(s)	52, 233, 274
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	2 cut(s)	49, 150
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	49, 108
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	35, 74, 325
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	227
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	82, 85
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PvuI	CGATCG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	3 cut(s)	35, 74, 325
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	49, 108
SetI	ASST	3 cut(s)	164, 349, 364
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	52, 233, 274
SsiI	CCGC	2 cut(s)	80, 83
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	47, 106
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	34, 135
TasI	AATT	3 cut(s)	52, 233, 274
TauI	GCSGC	2 cut(s)	83, 86
TscAI	CASTG	1 cut(s)	259
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	3 cut(s)	52, 233, 274
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.