Lignin degradation and detoxification of lignin-derived products
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g10020 |
| rosa_samantha | Rh5BG419300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Alw26I | GTCTC | 1 cut(s) | 74 |
| Ama87I | CYCGRG | 1 cut(s) | 184 |
| AoxI | GGCC | 1 cut(s) | 168 |
| AspS9I | GGNCC | 1 cut(s) | 168 |
| AsuC2I | CCSGG | 1 cut(s) | 166 |
| AsuHPI | GGTGA | 1 cut(s) | 15 |
| AvaI | CYCGRG | 1 cut(s) | 184 |
| BbvCI | CCTCAGC | 1 cut(s) | 78 |
| BcnI | CCSGG | 1 cut(s) | 166 |
| BcoDI | GTCTC | 1 cut(s) | 74 |
| Bme1390I | CCNGG | 1 cut(s) | 166 |
| BmeT110I | CYCGRG | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 1 cut(s) | 168 |
| BmiI | GGNNCC | 1 cut(s) | 169 |
| BmrFI | CCNGG | 1 cut(s) | 166 |
| Bpu10I | CCTNAGC | 1 cut(s) | 78 |
| BpuMI | CCSGG | 1 cut(s) | 166 |
| BsaJI | CCNNGG | 1 cut(s) | 165 |
| BseDI | CCNNGG | 1 cut(s) | 165 |
| BseMII | CTCAG | 1 cut(s) | 92 |
| BshFI | GGCC | 1 cut(s) | 170 |
| BsiHKCI | CYCGRG | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 165 |
| BsmAI | GTCTC | 1 cut(s) | 74 |
| BsnI | GGCC | 1 cut(s) | 170 |
| BsoBI | CYCGRG | 1 cut(s) | 184 |
| BspANI | GGCC | 1 cut(s) | 170 |
| BspCNI | CTCAG | 1 cut(s) | 91 |
| BspLI | GGNNCC | 1 cut(s) | 169 |
| BssECI | CCNNGG | 1 cut(s) | 165 |
| Bst4CI | ACNGT | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 1 cut(s) | 94 |
| BstDEI | CTNAG | 2 cut(s) | 35, 78 |
| BstMAI | GTCTC | 1 cut(s) | 74 |
| BstNSI | RCATGY | 1 cut(s) | 86 |
| BstSCI | CCNGG | 1 cut(s) | 164 |
| BsuRI | GGCC | 1 cut(s) | 170 |
| Cac8I | GCNNGC | 1 cut(s) | 94 |
| Cfr13I | GGNCC | 1 cut(s) | 168 |
| CviAII | CATG | 1 cut(s) | 83 |
| CviJI | RGCY | 1 cut(s) | 170 |
| CviKI_1 | RGCY | 1 cut(s) | 170 |
| DdeI | CTNAG | 2 cut(s) | 35, 78 |
| Eco88I | CYCGRG | 1 cut(s) | 184 |
| EcoO109I | RGGNCCY | 1 cut(s) | 168 |
| FaeI | CATG | 1 cut(s) | 86 |
| FaiI | YATR | 2 cut(s) | 84, 98 |
| FatI | CATG | 1 cut(s) | 82 |
| HaeIII | GGCC | 1 cut(s) | 170 |
| HapII | CCGG | 1 cut(s) | 165 |
| Hin1II | CATG | 1 cut(s) | 86 |
| HinfI | GANTC | 1 cut(s) | 39 |
| HpaII | CCGG | 1 cut(s) | 165 |
| HphI | GGTGA | 1 cut(s) | 15 |
| Hpy166II | GTNNAC | 1 cut(s) | 152 |
| Hpy188III | TCNNGA | 1 cut(s) | 186 |
| Hpy8I | GTNNAC | 1 cut(s) | 152 |
| HpyCH4III | ACNGT | 1 cut(s) | 149 |
| HpyCH4IV | ACGT | 1 cut(s) | 62 |
| HpyCH4V | TGCA | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 2 cut(s) | 35, 78 |
| HpySE526I | ACGT | 1 cut(s) | 62 |
| Hsp92II | CATG | 1 cut(s) | 86 |
| LpnPI | CCDG | 2 cut(s) | 39, 178 |
| MaeII | ACGT | 1 cut(s) | 62 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MluCI | AATT | 1 cut(s) | 175 |
| MlyI | GAGTC | 1 cut(s) | 33 |
| MnlI | CCTC | 4 cut(s) | 87, 96, 181, 182 |
| MspI | CCGG | 1 cut(s) | 165 |
| MspR9I | CCNGG | 1 cut(s) | 166 |
| NciI | CCSGG | 1 cut(s) | 166 |
| NlaIII | CATG | 1 cut(s) | 86 |
| NlaIV | GGNNCC | 1 cut(s) | 169 |
| NspI | RCATGY | 1 cut(s) | 86 |
| PleI | GAGTC | 1 cut(s) | 33 |
| PpsI | GAGTC | 1 cut(s) | 33 |
| PspN4I | GGNNCC | 1 cut(s) | 169 |
| PspPI | GGNCC | 1 cut(s) | 168 |
| Sau96I | GGNCC | 1 cut(s) | 168 |
| SchI | GAGTC | 1 cut(s) | 33 |
| ScrFI | CCNGG | 1 cut(s) | 166 |
| SetI | ASST | 1 cut(s) | 65 |
| SgeI | CNNG | 8 cut(s) | 38, 95, 105, 114, 124, 167, 177, 178 |
| Sse9I | AATT | 1 cut(s) | 175 |
| StyD4I | CCNGG | 1 cut(s) | 164 |
| TaaI | ACNGT | 1 cut(s) | 149 |
| TaiI | ACGT | 1 cut(s) | 65 |
| TasI | AATT | 1 cut(s) | 175 |
| XceI | RCATGY | 1 cut(s) | 86 |