Lignin degradation and detoxification of lignin-derived products
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom11g10020 |
| rosa_samantha | Rh5BG419300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 136 |
| AgsI | TTSAA | 1 cut(s) | 119 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 178 |
| AjnI | CCWGG | 1 cut(s) | 101 |
| AluBI | AGCT | 1 cut(s) | 82 |
| AluI | AGCT | 1 cut(s) | 82 |
| Alw26I | GTCTC | 2 cut(s) | 13, 74 |
| AlwI | GGATC | 1 cut(s) | 136 |
| AoxI | GGCC | 2 cut(s) | 151, 159 |
| AspS9I | GGNCC | 2 cut(s) | 151, 159 |
| AsuC2I | CCSGG | 1 cut(s) | 146 |
| BccI | CCATC | 1 cut(s) | 150 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 111, 145 |
| BciT130I | CCWGG | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 146 |
| BcoDI | GTCTC | 2 cut(s) | 13, 74 |
| Bme1390I | CCNGG | 2 cut(s) | 103, 146 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 2 cut(s) | 151, 159 |
| BmrFI | CCNGG | 2 cut(s) | 103, 146 |
| BpuMI | CCSGG | 1 cut(s) | 146 |
| Bse118I | RCCGGY | 1 cut(s) | 161 |
| Bse3DI | GCAATG | 1 cut(s) | 20 |
| BseBI | CCWGG | 1 cut(s) | 103 |
| BseMI | GCAATG | 1 cut(s) | 20 |
| BseMII | CTCAG | 2 cut(s) | 69, 85 |
| BshFI | GGCC | 2 cut(s) | 153, 161 |
| BsiSI | CCGG | 2 cut(s) | 145, 162 |
| BsmAI | GTCTC | 2 cut(s) | 13, 74 |
| BsnI | GGCC | 2 cut(s) | 153, 161 |
| Bsp143I | GATC | 1 cut(s) | 141 |
| BspANI | GGCC | 2 cut(s) | 153, 161 |
| BspCNI | CTCAG | 2 cut(s) | 70, 84 |
| BspPI | GGATC | 1 cut(s) | 136 |
| BsrDI | GCAATG | 1 cut(s) | 20 |
| BsrFI | RCCGGY | 1 cut(s) | 161 |
| BssAI | RCCGGY | 1 cut(s) | 161 |
| BssMI | GATC | 1 cut(s) | 141 |
| Bst2UI | CCWGG | 1 cut(s) | 103 |
| Bst6I | CTCTTC | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 4 cut(s) | 27, 84, 94, 163 |
| BstDEI | CTNAG | 2 cut(s) | 71, 78 |
| BstKTI | GATC | 1 cut(s) | 144 |
| BstMAI | GTCTC | 2 cut(s) | 13, 74 |
| BstMBI | GATC | 1 cut(s) | 141 |
| BstNI | CCWGG | 1 cut(s) | 103 |
| BstSCI | CCNGG | 2 cut(s) | 101, 144 |
| BsuRI | GGCC | 2 cut(s) | 153, 161 |
| Cac8I | GCNNGC | 4 cut(s) | 27, 84, 94, 163 |
| Cfr10I | RCCGGY | 1 cut(s) | 161 |
| Cfr13I | GGNCC | 2 cut(s) | 151, 159 |
| CviAII | CATG | 1 cut(s) | 123 |
| CviJI | RGCY | 4 cut(s) | 40, 82, 153, 161 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 82, 153, 161 |
| DdeI | CTNAG | 2 cut(s) | 71, 78 |
| DpnI | GATC | 1 cut(s) | 143 |
| DpnII | GATC | 1 cut(s) | 141 |
| DriI | GACNNNNNGTC | 1 cut(s) | 178 |
| Eam1104I | CTCTTC | 1 cut(s) | 53 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 178 |
| EarI | CTCTTC | 1 cut(s) | 53 |
| EcoRII | CCWGG | 1 cut(s) | 101 |
| FaeI | CATG | 1 cut(s) | 126 |
| FaiI | YATR | 5 cut(s) | 59, 124, 167, 169, 186 |
| FatI | CATG | 1 cut(s) | 122 |
| FauNDI | CATATG | 1 cut(s) | 167 |
| HaeIII | GGCC | 2 cut(s) | 153, 161 |
| HapII | CCGG | 2 cut(s) | 145, 162 |
| Hin1II | CATG | 1 cut(s) | 126 |
| HinfI | GANTC | 1 cut(s) | 128 |
| HpaII | CCGG | 2 cut(s) | 145, 162 |
| Hpy188I | TCNGA | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 86, 92 |
| HpyF3I | CTNAG | 2 cut(s) | 71, 78 |
| Hsp92II | CATG | 1 cut(s) | 126 |
| KroI | GCCGGC | 1 cut(s) | 161 |
| KroNI | GCCGGC | 1 cut(s) | 163 |
| Kzo9I | GATC | 1 cut(s) | 141 |
| LpnPI | CCDG | 6 cut(s) | 22, 88, 115, 158, 175, 178 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MalI | GATC | 1 cut(s) | 143 |
| MboI | GATC | 1 cut(s) | 141 |
| MboII | GAAGA | 1 cut(s) | 40 |
| MroNI | GCCGGC | 1 cut(s) | 161 |
| MspI | CCGG | 2 cut(s) | 145, 162 |
| MspR9I | CCNGG | 2 cut(s) | 103, 146 |
| MvaI | CCWGG | 1 cut(s) | 103 |
| NaeI | GCCGGC | 1 cut(s) | 163 |
| NciI | CCSGG | 1 cut(s) | 146 |
| NdeI | CATATG | 1 cut(s) | 167 |
| NdeII | GATC | 1 cut(s) | 141 |
| NgoMIV | GCCGGC | 1 cut(s) | 161 |
| NlaIII | CATG | 1 cut(s) | 126 |
| NmuCI | GTSAC | 1 cut(s) | 170 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 137 |
| PdiI | GCCGGC | 1 cut(s) | 163 |
| PfeI | GAWTC | 1 cut(s) | 128 |
| Psp6I | CCWGG | 1 cut(s) | 101 |
| PspGI | CCWGG | 1 cut(s) | 101 |
| PspPI | GGNCC | 2 cut(s) | 151, 159 |
| Sau3AI | GATC | 1 cut(s) | 141 |
| Sau96I | GGNCC | 2 cut(s) | 151, 159 |
| ScrFI | CCNGG | 2 cut(s) | 103, 146 |
| SetI | ASST | 2 cut(s) | 84, 197 |
| StyD4I | CCNGG | 2 cut(s) | 101, 144 |
| TaqI | TCGA | 2 cut(s) | 131, 140 |
| TfiI | GAWTC | 1 cut(s) | 128 |
| TseFI | GTSAC | 1 cut(s) | 170 |
| Tsp45I | GTSAC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 2 cut(s) | 9, 46 |