pycom11g11980

Catalyzes xyloglucan endohydrolysis (XEH) and or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0024680
Physical Location & Seq
Forward (+)
10841836 .. 10842126
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGTGGACATATGGATCGATATGGGATGCATCATCATGGGCCACAGAGGATGGAAAATACAAAGCCGACTACAAGTACCAACCATTTATTGGCAAGTACAACAATTTCAAGCTTGGTGGGTGTAAATCCGATAGCCCTACGTTATGCCGACCGCCCTCCGCCTCACCGTTCGGCTCATCGGGGCTGAGTCAGCAGCAGTACTCGGCCATGGAGTGGGTGCAGCGGAACTACTTGGTCTATGACTATTGCCATGATCCAAAGAGAGACCATACACAAACACCCGAATGCTGA

Protein Analysis

97

Amino Acids

11.07

Weight (kDa)

6.69

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XET_C PF06955 59 - 96 2e-15 Xyloglucan endo-transglycosylase (XET) C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024680)

Species Orthologous Gene IDs
pyrus_communis pycom11g11980
rosa_multiflora Rmu_sc0009185.1_g000030
rosa_samantha Rh5DG399800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 89, 213
AciI CCGC 3 cut(s) 152, 159, 223
AclWI GGATC 2 cut(s) 22, 248
AcoI YGGCCR 1 cut(s) 204
AfaI GTAC 3 cut(s) 77, 98, 200
AfiI CCNNNNNNNGG 2 cut(s) 89, 213
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 22, 248
AoxI GGCC 2 cut(s) 39, 204
ApeKI GCWGC 2 cut(s) 193, 220
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 156
BbvI GCAGC 2 cut(s) 205, 232
BccI CCATC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 258
BisI GCNGC 2 cut(s) 194, 221
BlsI GCNGC 2 cut(s) 195, 222
BmcAI AGTACT 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 39
BmsI GCATC 2 cut(s) 16, 38
Bsa29I ATCGAT 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 213
BseCI ATCGAT 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 2 cut(s) 31, 55
BseLI CCNNNNNNNGG 2 cut(s) 89, 213
BseMII CTCAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 205, 232
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 152
BshFI GGCC 2 cut(s) 41, 206
BshVI ATCGAT 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 89, 213
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 2 cut(s) 41, 206
Bso31I GGTCTC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 14, 253
Bsp19I CCATGG 1 cut(s) 207
BspACI CCGC 3 cut(s) 152, 159, 223
BspANI GGCC 2 cut(s) 41, 206
BspCNI CTCAG 1 cut(s) 177
BspDI ATCGAT 1 cut(s) 17
BspPI GGATC 2 cut(s) 22, 248
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 14, 253
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 31, 55
BstKTI GATC 2 cut(s) 17, 256
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 14, 253
BstMCI CGRYCG 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 205, 232
Bsu15I ATCGAT 1 cut(s) 17
BsuRI GGCC 2 cut(s) 41, 206
BsuTUI ATCGAT 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 31, 55
Cfr13I GGNCC 1 cut(s) 39
ClaI ATCGAT 1 cut(s) 17
Csp6I GTAC 3 cut(s) 76, 97, 199
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 3 cut(s) 36, 208, 251
CviJI RGCY 7 cut(s) 41, 65, 112, 135, 174, 184, 206
CviKI_1 RGCY 7 cut(s) 41, 65, 112, 135, 174, 184, 206
CviQI GTAC 3 cut(s) 76, 97, 199
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 16, 255
DpnII GATC 2 cut(s) 14, 253
EaeI YGGCCR 1 cut(s) 204
EciI GGCGGA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 207
Eco31I GGTCTC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 3 cut(s) 39, 211, 254
FaiI YATR 9 cut(s) 10, 12, 22, 37, 145, 209, 240, 252, 270
FatI CATG 3 cut(s) 35, 207, 250
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 194, 221
FokI GGATG 2 cut(s) 38, 62
Fsp4HI GCNGC 2 cut(s) 194, 221
GluI GCNGC 2 cut(s) 194, 221
HaeIII GGCC 2 cut(s) 41, 206
Hin1II CATG 3 cut(s) 39, 211, 254
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 156
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 29, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 39, 211, 254
Kzo9I GATC 2 cut(s) 14, 253
Lsp1109I GCAGC 2 cut(s) 205, 232
LweI GCATC 2 cut(s) 16, 38
MaeII ACGT 1 cut(s) 140
MalI GATC 2 cut(s) 16, 255
MboI GATC 2 cut(s) 14, 253
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 3 cut(s) 40, 166, 172
Mph1103I ATGCAT 1 cut(s) 31
MslI CAYNNNNRTG 2 cut(s) 34, 283
MspA1I CMGCKG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 190
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 14, 253
NlaIII CATG 3 cut(s) 39, 211, 254
NmeAIII GCCGAG 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 31
PctI GAATGC 1 cut(s) 290
PflMI CCANNNNNTGG 2 cut(s) 89, 213
PkrI GCNGC 2 cut(s) 195, 222
PleI GAGTC 1 cut(s) 195
PpsI GAGTC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 3 cut(s) 77, 98, 200
RsaNI GTAC 3 cut(s) 76, 97, 199
RseI CAYNNNNRTG 2 cut(s) 34, 283
SatI GCNGC 2 cut(s) 194, 221
Sau3AI GATC 2 cut(s) 14, 253
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 200
SchI GAGTC 1 cut(s) 196
SetI ASST 2 cut(s) 114, 143
SfaNI GCATC 2 cut(s) 16, 38
SmiMI CAYNNNNRTG 2 cut(s) 34, 283
Sse9I AATT 1 cut(s) 103
SsiI CCGC 3 cut(s) 152, 159, 223
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 17
TasI AATT 1 cut(s) 103
TatI WGTACW 2 cut(s) 96, 198
TseI GCWGC 2 cut(s) 193, 220
Van91I CCANNNNNTGG 2 cut(s) 89, 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.