pycom11g14060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0028602
Physical Location & Seq
Forward (+)
13861514 .. 13862049
536 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g14060.1

Sequence Viewer

Length: 375 bp
ATGGGTACGAAAGGAAATAAACTTGCTGAACTGCATTGTCATCTGTTGTTCTGGTTTTTCTTAGACAAGTTAACTTGCTCTCTCTTTGCAGTAAGGTGCACAAATATGGGAAAAGCACGACAGGGGAAAGCTGGGATATTGTTGTGGATGAGGAGACCTATTACGAGCCTGAGCCGCCTTACGGGTGGGCAGATGTTGTTGGTGACTGTAGCCAACTGCTGTCAATTAAGCCTCGGGAAAGGCCAGCCGGCGTCTACCTTGCCCTTGATTTTGGATCATCGTCGCCTTCAGTTGATGAACCACCAGATGGATTTTCTCCAATATCGTGCGGCTCAAAGAATTTTGTATGCGTTTTCGCGTATTTTTGTACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.12

Weight (kDa)

10.45

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0028602)

Species Orthologous Gene IDs
malus_domestica MD01G1180300.v1.1
pyrus_communis pycom11g14060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 1 cut(s) 254
AccII CGCG 1 cut(s) 358
AciI CCGC 2 cut(s) 175, 329
AclWI GGATC 1 cut(s) 282
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 2 cut(s) 7, 369
AfiI CCNNNNNNNGG 2 cut(s) 181, 307
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 148
Alw44I GTGCAC 1 cut(s) 97
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 1 cut(s) 241
ApaLI GTGCAC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 148
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 2 cut(s) 175, 330
BlsI GCNGC 2 cut(s) 176, 331
BmeT110I CYCGRG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 307
Bse118I RCCGGY 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 181, 307
BseMII CTCAG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 358
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 181, 307
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 2 cut(s) 175, 329
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 1 cut(s) 162
BspFNI CGCG 1 cut(s) 358
BspPI GGATC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 245, 249
BstDEI CTNAG 2 cut(s) 61, 170
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 358
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 101
BstUI CGCG 1 cut(s) 358
BsuRI GGCC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 2 cut(s) 245, 249
Cfr10I RCCGGY 1 cut(s) 247
CseI GACGC 1 cut(s) 240
Csp6I GTAC 2 cut(s) 6, 368
CviJI RGCY 8 cut(s) 131, 168, 174, 212, 231, 243, 247, 332
CviKI_1 RGCY 8 cut(s) 131, 168, 174, 212, 231, 243, 247, 332
CviQI GTAC 2 cut(s) 6, 368
DdeI CTNAG 2 cut(s) 61, 170
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 272
Eco88I CYCGRG 1 cut(s) 233
FaiI YATR 2 cut(s) 107, 348
FblI GTMKAC 1 cut(s) 254
Fnu4HI GCNGC 2 cut(s) 175, 330
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 175, 330
GluI GCNGC 2 cut(s) 175, 330
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 243
HapII CCGG 1 cut(s) 248
HgaI GACGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HpaI GTTAAC 1 cut(s) 72
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 72, 99, 255
Hpy188I TCNGA 1 cut(s) 374
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 3 cut(s) 72, 99, 255
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 296
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 34, 89, 99
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 61, 170
Hsp92I GRCGYC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
KspAI GTTAAC 1 cut(s) 72
Kzo9I GATC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 37, 107, 117, 182, 257, 261, 317
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 224, 339
MnlI CCTC 2 cut(s) 144, 242
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 2 cut(s) 71, 227
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 174
NaeI GCCGGC 1 cut(s) 249
NdeII GATC 1 cut(s) 274
NgoMIV GCCGGC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 202
PdiI GCCGGC 1 cut(s) 249
PflMI CCANNNNNTGG 1 cut(s) 307
PkrI GCNGC 2 cut(s) 176, 331
PspFI CCCAGC 1 cut(s) 131
RsaI GTAC 2 cut(s) 7, 369
RsaNI GTAC 2 cut(s) 6, 368
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 71, 227
SatI GCNGC 2 cut(s) 175, 330
Sau3AI GATC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 101
SetI ASST 4 cut(s) 98, 133, 160, 260
SfcI CTRYAG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 2 cut(s) 224, 339
SsiI CCGC 2 cut(s) 175, 329
TaaI ACNGT 1 cut(s) 208
TasI AATT 2 cut(s) 224, 339
TatI WGTACW 1 cut(s) 367
TauI GCSGC 2 cut(s) 177, 332
Tru1I TTAA 2 cut(s) 71, 227
Tru9I TTAA 2 cut(s) 71, 227
TseFI GTSAC 1 cut(s) 202
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 307
VneI GTGCAC 1 cut(s) 97
XapI RAATTY 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.